KEGG   Daucus carota (carrot): 108197020
Entry
108197020         CDS       T05350                                 
Name
(RefSeq) DNA repair protein RAD5B isoform X1
  KO
K15505  DNA repair protein RAD5 [EC:5.6.2.-]
Organism
dcr  Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:dcr03400]
    108197020
DNA repair and recombination proteins [BR:dcr03400]
 Eukaryotic type
  TLS (translesion DNA synthesis) factors
   Rad6 epistasis group
    108197020
SSDB
Motif
Pfam: SNF2-rel_dom Helicase_C zf-C3HC4_3 zf-RING_UBOX HIRAN zf-C3HC4_2 zf-C3HC4 zf-RING_2 DEAD UBA_RAD5A zf-C3HC4_4 zf-RING_5 RING_XB3-XBAT31 ResIII Prok-RING_4 zf-RING_4 UBA_Rad5 ERCC3_RAD25_C CUE
Other DBs
NCBI-GeneID: 108197020
NCBI-ProteinID: XP_017219975
LinkDB
Position
8:25978892..25986246
AA seq 1342 aa
MEAMALDGIDVKEEENMKVIKSIFGCDVPESNVKSVLLKCKNDLGVAINEILDNPLVLSS
DFGVKKTVTSTGARVMAQFKGEEGEECVDVKPLLEWKVEGKGEGEVDMGPHCALCVQWNR
WNGGEGGDECEGVVKVEEECGQIVRENGDGIICVEDEGGSEGKGVVKVDEECGKGDVEMG
CECGPVVRESVDVVCVEDEGGSECKEVVKVEECEKGDIEMGCECAPIVRENVDVVCVEDE
GGSECKEVVKVEECEKGDIEMGFECAPIVRENVDVVCVEDEGGNECKEVVKVKEECEKDI
EMGFECAPIVRENVDVVCVEDEGGNECKEVVKVKEVCEKGDVKMNCEGEPPVEEGVGEND
FVEDEAESAYRPLVKGKKQGGVKRNNDRALVVKDGAIMVEPLSSVPAKPKMSMYDRLKPS
GVKKQKVEDNVLSTVVIDDADFPEEEDWLLVGRTAITGLSTTRGRKLENNEVVHLAFPGS
DMKSKCSSPFIRSKTVAALSGIVRFSTTRYGEIGRLPMEWGKCLIPLVNSSKVKVLCRCI
AVPTNLQLMQEILLYGSFYIHRSLFTEVTNSSWKLDAPSNIDSTIYPLLTLFKLLKIQPY
QKAEFTPEELQSRKRGLNLDDESKEFAGVLPVLKRGKGCQPDHGKDEQAILESSLNKLVG
AADVYNLEEMEPPSTLMCDLRPYQKQALYWMTELEKGVDAEKATKTLHPCWAAYRLCDER
ASSIHVNVFSGEATTQFPTATQTARGGILADAMGLGKTVMTIGLILARPGRGIPEAKHIV
PEAPIDTEYPTTKRTDNGLSRKARGGTLIICPMALLGQWKDELITHSKPESITVSVHYGG
ERSNDPEVIAEPDVVLTTYGVLTAAYKSDPNNSIFHRVDWHRVVLDEAHTIKSSKTQAAQ
AAFALSSYCRWCLTGTPLQNSLEDIYSLLCFLHVEPWCNWAWWHKLIQKPYENGDYRGLK
LIKAILRPLMLRRSKDTVDKHGRPILVLPPTDIQIIECKQSEAERDFYDALFKRSKVQFD
QFVAQGKVLHNYANILELLLRLRQCCNHPFLVMSRGDSQEYADLNKLAKRFLETDPDSAN
PIQVPSRAYIEEVVDGIRRGDNTECPICLESADDPVLTPCAHRMCRECLLSSWRTPAAGQ
CPICRHILNKNELITCPSENRFRIDVDKNWTESSKVSHLLDCLEQIRRQKSGDKSIIFSQ
WTSFLDLLEIPLKRRNIGFLRFDGKLSQKQREKVLKEFSETNVKMVMLMSLKVGGVGLNL
TSASNVFLMDPWWNPAVEEQAIMRIHRIGQKKTVRVRRFIVKETVEDRMQQVQARKQRMI
AGALTDEEVRSARIDELKMLFR
NT seq 4029 nt   +upstreamnt  +downstreamnt
atggaagcaatggctttagatggcattgatgtaaaggaagaggagaatatgaaggtaatt
aaatcgatatttgggtgtgatgtgcctgagagcaatgttaaatccgtgttgttgaagtgt
aaaaacgatctgggtgttgctattaatgagattcttgataaccctttggttttgtcttcg
gatttcggggttaagaagacggttacgagcaccggggctcgtgtgatggcgcagtttaag
ggggaagagggtgaggagtgtgtggatgtgaaaccccttttggagtggaaggtggagggg
aagggagaaggggaggttgatatggggcctcactgcgcgttatgtgttcaatggaatcga
tggaatggtggtgaggggggagatgaatgtgagggtgtggttaaggttgaggaggagtgt
ggacagattgttcgagaaaatggggatgggattatttgtgttgaggatgagggagggagt
gagggtaagggtgtggttaaggtggatgaagagtgtggaaagggggatgttgaaatgggg
tgtgagtgtggaccggttgttcgagaaagtgttgatgtggtttgtgttgaggatgagggg
gggagtgagtgtaaggaggtagttaaggttgaggagtgtgaaaagggggacattgaaatg
ggatgtgagtgtgcaccaattgttcgagaaaatgttgatgtggtttgtgttgaggatgag
ggggggagtgagtgtaaggaggtagttaaggttgaggagtgtgaaaagggggatattgaa
atgggatttgagtgtgcaccgattgttagagagaatgtcgatgtggtttgtgttgaggat
gaggggggaaatgagtgtaaggaggtagttaaggtcaaggaggagtgtgaaaaggatatt
gaaatgggatttgagtgtgcaccgattgttagagagaatgtcgatgtggtttgtgttgag
gatgaggggggaaatgagtgtaaggaggtagtgaaggtcaaggaggtgtgtgaaaagggg
gatgtgaagatgaattgtgagggtgagccgcctgttgaagagggtgtcggggagaatgat
tttgttgaggatgaagcagagagtgcgtacaggcctctggtcaaggggaagaaacaaggt
ggtgtgaagcgaaacaatgacagagctcttgttgtgaaagatggagcaatcatggttgag
ccgttgtcttcggtgcctgcgaagccgaagatgtctatgtatgataggttgaaaccttct
ggtgtgaagaagcaaaaagtggaggataatgtgttgagtactgttgtgattgatgatgcg
gattttccggaagaggaagattggttgttggtgggaaggactgccattactgggctttcg
acaactagagggaggaagttggagaataatgaggttgtccacttggcatttcctggcagt
gacatgaaatcgaagtgtagttcaccatttattcggtcaaagacagttgctgccttgtcg
gggattgttcgtttttcaaccacaagatatggagagattggtcgtcttccaatggagtgg
gggaaatgcctcattccactagttaactcttctaaggtgaaagttctttgtcggtgcata
gctgttcctacaaatctgcagttgatgcaagaaatattgttgtatggaagcttttatatt
catcgttcgcttttcacagaagtcaccaactcatcctggaagctagatgctccttctaac
attgactcaactatttatcctctcttgactttgttcaagttactaaagatacaaccatat
cagaaggctgaatttaccccggaggaacttcagtcaagaaaacgtggtttgaacttagat
gatgaatctaaagaatttgctggtgtgttgcccgtgctgaaacgaggcaaaggttgccag
ccagaccatggtaaagatgagcaagctatactggaatcatccttaaacaagcttgttggt
gctgcagatgtgtataacttggaggagatggaacccccaagtactcttatgtgtgactta
agaccataccagaagcaagcactctactggatgacagaattggagaagggagttgatgcc
gagaaagcaacaaaaacactccatccctgctgggcggcatatcgcttatgtgatgagagg
gcttcttccatacatgtgaacgtcttctctggtgaagcaacaactcaattcccaactgcc
acacaaactgccaggggagggattttagcagatgcaatggggctgggaaaaactgtaatg
acaataggtcttatacttgcaagacctgggaggggaattcctgaagctaagcatattgtt
ccggaagcaccaattgacacagaatatccaacgacaaagagaacagataatggactgtca
agaaaagcaagaggtgggactcttattatatgtcctatggcattgctaggccagtggaag
gatgagcttataacccattccaagccagaaagtattacagtatctgttcactatggtggt
gaaagaagtaatgatcctgaggtcatagcagaacctgatgtagttttaacaacttatggt
gtcctaactgcagcttataagagtgatccaaataacagcatctttcatagagtagactgg
cacagggtggtgttggatgaagctcataccataaaatcctccaagactcaagctgcacag
gcagcctttgcgttgtcctcatattgcaggtggtgtctcaccggtacacctcttcagaat
agcttggaagacatctatagtctattatgctttttgcatgtcgagccatggtgcaactgg
gcatggtggcacaagttgattcagaaaccctatgaaaatggtgattaccgaggacttaaa
ctgataaaagctattctgagaccattaatgttaaggagaagtaaagatactgtggataaa
catggaaggccaattcttgttctgccaccaactgacattcaaatcattgaatgcaagcaa
tcagaagctgaacgtgacttttatgatgctctctttaagagatccaaagttcaatttgac
caatttgtggcacaaggaaaagttctccacaactatgcaaatattcttgagttgttactt
cggttgagacagtgttgcaaccacccatttcttgtaatgagccgaggtgattcacaggag
tacgctgatttaaataagcttgcaaagagattcctggaaactgatcctgattctgcaaat
ccaattcaagttccttctcgagcatatattgaagaggttgttgatggtatcaggcgtggt
gataacacggagtgtcctatatgcctggagtctgcggatgaccctgtactcacaccatgt
gcacaccgaatgtgcagggaatgccttctctccagctggagaactccagctgccggacag
tgcccaatatgccgccatatactgaacaaaaatgaactcatcacatgcccatctgagaac
cggtttcgaattgatgttgataagaactggacagagtcttccaaggtgtcacatctctta
gattgcttggaacaaattaggcgtcaaaagtctggtgataaaagcatcatatttagccaa
tggacttcatttctggacctcctggaaattcctctaaagaggagaaatattgggttcttg
agatttgatggaaaattgtcacagaaacaaagggagaaggttttaaaggagtttagtgag
actaatgtaaaaatggttatgttaatgtcattaaaagttggcggagtgggcttgaatttg
acttcagcatcaaatgtctttctcatggatccttggtggaatcctgctgtggaagagcaa
gcaatcatgcgtattcatcgcattggtcaaaagaaaacagttcgtgtcagaagattcatt
gttaaggaaacagtagaggatcgaatgcaacaagttcaagcgagaaaacaaaggatgatt
gccggagcgttaactgatgaagaagtccgttctgccagaatcgatgaactcaaaatgctg
tttagataa

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