Daucus carota (carrot): 108197183
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Entry
108197183 CDS
T05350
Name
(RefSeq) cleavage and polyadenylation specificity factor subunit 3-II
KO
K13148
integrator complex subunit 11 [EC:3.1.27.-]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108197183
Spliceosome [BR:
dcr03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
Integrator complex
108197183
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Gene cluster
GFIT
Motif
Pfam:
Beta-Casp
Lactamase_B_6
RMMBL
Lactamase_B
Lactamase_B_2
Anti-Pycsar_Apyc1
Lactamase_B_3
Motif
Other DBs
NCBI-GeneID:
108197183
NCBI-ProteinID:
XP_017220213
UniProt:
A0A175YQ71
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Position
8:30010646..30020106
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AA seq
652 aa
AA seq
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MAIDCLVLGAGQEVGKSCVVVNMNGKKIMFDCGMHMGHHDHQRYPDFSRISRTGDFDSSL
TCIIITHFHLDHIGALPYFTEVCGYKGPIYMTYPTKALAPLMLEDYRKVMVDRRGEEEQF
TSENIEECMKKVTAVDLKQTVQVDKDLQIRAYYAGHVLGAAMFYAKVGDSAIVYTGDYNM
TPDRHLGAAQIDRLHLDLLISESTYGTTIRDSKYAREREFLDAVHKCVTNGGKVLIPTFA
LGRAQELCILLDDYWERMSLKVPIYFSAGLTLQANLYYKVLINWTSQKVKDAYTTRNAFD
FKHVCSFDRSLINAPGPCVLFATPGMISGGFSLEVFKHWAPYEKNLITLPGYCVAGTVGH
KLMSGKPTKVNVDRDTQVDVRCKIHQLSFSPHTDAKGIMDLVNFLSPKHVILVHGEKPRM
IALQGRIQSELGIQSFCPANNETVSIPSTHYVKADISDTLRRHSKCPNFKFSKTDSGENS
DTGFMPTPLNPLQVFDDRVTEGILCLDRSKKAKVVHQDEFLGMLGAEKHELQFAYCCQVP
IGNLGNAIETEVANVLPVIDNGSWLHLLTGKLAIELNDVNIQECGEHIQVESISISVCLN
DDCPHRISETNLNKSEAVYFCCTWLAADEPLARNVISTLRKLELSTNLTTAG
NT seq
1959 nt
NT seq
+upstream
nt +downstream
nt
atggcgatcgattgtttagttctgggggcaggccaagaagtgggcaagagctgtgtggtg
gtgaacatgaatggcaagaaaattatgttcgattgcgggatgcatatgggtcatcatgat
caccagagataccccgatttctctcgtatttcgagaaccggggatttcgatagctccctt
acttgcattatcatcacacactttcaccttgaccatattggagctttgccatacttcact
gaagtctgtggatacaagggaccaatttatatgacgtatccaacaaaagctctcgctcct
ttgatgttggaggattatcggaaagttatggttgacagaaggggagaagaagaacagttt
acatccgaaaatattgaagaatgtatgaagaaagttactgctgtggatttaaagcagacg
gtgcaggttgataaggatcttcagatacgtgcatactatgctggacatgtgcttggagct
gcaatgttttatgctaaagtaggagattctgcaatagtttacaccggtgattataatatg
acacctgatagacatcttggagctgcacaaatcgatcggctgcatttggaccttcttata
tcagagtcgacctatggtacaactatacgagattcaaaatatgctcgggaaagagaattt
cttgatgctgttcataaatgtgttaccaatggagggaaagtgctcattcctacatttgct
cttggtcgagctcaggaactttgtatactattggatgattactgggagaggatgagttta
aaggttcccatatacttttctgcaggattgactttacaagctaatctgtattataaagtt
ctcattaactggaccagccaaaaggtgaaagatgcatataccactcggaatgcatttgat
ttcaaacatgtttgcagctttgaccgttccttgataaatgctcctggaccttgtgttctt
tttgctacacctggaatgatcagtggtggcttttcacttgaggtttttaagcattgggct
ccatatgaaaagaaccttattacgctgccaggttattgtgtagcgggaactgtagggcac
aagctgatgtcaggcaaacccactaaagtcaatgtggatagagatacccaagttgatgtg
cgatgcaagattcatcagttgtcttttagtcctcacacggatgccaaaggaattatggac
ctagttaattttctatctcccaagcatgtgattcttgtgcatggtgaaaagcctaggatg
atcgcactccaaggaagaattcaatctgagttgggtatacagagtttttgtccagcaaac
aatgaaacagtgtcaattccttcgactcattatgtgaaagctgatatttcagatacacta
agacgacattcaaagtgtccgaacttcaaattctcaaaaacagattcaggagaaaattcc
gatacagggtttatgccaacgccacttaatccattgcaggtgtttgatgatagagtaact
gaagggatcttgtgtctggacagaagcaagaaagcaaaggtcgtccaccaagacgaattt
ctgggcatgctgggagctgaaaagcacgaactacagtttgcttattgttgtcaggtacct
attggcaacttaggaaatgctatagagactgaagttgcaaatgtgcttcctgtcattgac
aacggctcctggcttcacctattaactgggaaacttgcaattgaacttaatgatgttaac
atccaagaatgtggagaacatattcaagtagaatctatcagcatatccgtctgccttaat
gatgattgcccgcatagaataagcgaaactaatcttaacaagtcggaagcagtatacttc
tgttgcacctggttagcagcggatgagccgcttgccaggaatgtcatttccacactgagg
aagttagagctgagcactaatttaactacagcaggctaa
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