Daucus carota (carrot): 108198398
Help
Entry
108198398 CDS
T05350
Name
(RefSeq) polygalacturonase
KO
K01184
polygalacturonase [EC:
3.2.1.15
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr00040
Pentose and glucuronate interconversions
dcr01100
Metabolic pathways
Module
dcr_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108198398
Enzymes [BR:
dcr01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.15 endo-polygalacturonase
108198398
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pect-lyase_RHGA_epim
Sld7_N
Motif
Other DBs
NCBI-GeneID:
108198398
NCBI-ProteinID:
XP_017221642
LinkDB
All DBs
Position
8:complement(23997434..24000897)
Genome browser
AA seq
395 aa
AA seq
DB search
MMTRAIMGYIFATLCLAFFKHSASAAVSSYNVQELGAKADGTTDSTKFFLSAWSLACASN
VSAQVYVPSGKYLISNAVVFSGRNCKRTMVMRIDGTIIAPADYNLIANDEIWIKFDNVNG
LYISGGTVDAQAAPLWACKASGNSCPTGATSLGFYSSRNIVVSGIASINSQMFHMIVYKC
NNTKLQGIKISAPVDSPNTDGIHVQLSTGVSILSSQIGTGDDCVSIGPGTTDTWIESVSC
GPGHGISIGSLGWNLQEPGVQNLTVKTVTFRNTENGVRIKTWARSSTGFVNNVLFQHISM
GNVKNPILIDQDYCPNQENCPDKVSGVKISNVIYQDIHGTSATPVALRLQCSKSFPCSGI
RLQDVELTYNNQSATSSCANAAGEASGVMKPSSCL
NT seq
1188 nt
NT seq
+upstream
nt +downstream
nt
atgatgactcgtgccataatgggctatatttttgccacactatgcttggcctttttcaag
cattcagcctcagcagctgtatcatcttacaatgttcaagaattgggagcaaaagctgat
ggcaccacagactcaacaaagttttttctaagtgcttggagcttggcttgtgcttctaat
gtttcagcccaagtgtacgtgccctcgggtaaatacttgatcagcaatgccgtggtcttt
agcggccgcaactgtaaaaggactatggttatgcgtattgatggcacgatcatagctcct
gctgattacaatcttatagccaatgatgaaatctggatcaagttcgataatgttaatgga
ctttatatctctggcggaaccgtagacgctcaggctgcgcctctgtgggcttgcaaagcc
tcggggaatagctgccctacaggggcaacgagtcttgggttctacagctcaaggaacatt
gttgtgagtggaatagcatcaataaatagtcaaatgtttcatatgattgtctataagtgc
aacaacacaaagctacaaggaatcaagatttcagcgcctgttgatagccccaacaccgac
ggaattcacgtacagttgtcaacaggagtcagcatactgagctctcaaattggtaccgga
gatgactgcgtctcaattggacctgggactactgacacatggattgaaagtgtgtcgtgc
ggccccggtcacggcattagcatcggaagtcttggttggaatttgcaagaacctggagtc
cagaatctgacagttaaaacggttaccttcagaaataccgaaaatggagtcagaattaag
acatgggcgaggtctagcacagggtttgttaataatgttctttttcagcacatttctatg
ggtaatgtcaaaaatcccattctaattgatcaagactattgtcctaatcaagaaaattgc
cctgataaggtttcgggtgtgaagatcagcaatgtgatatatcaagatattcacggaaca
tcagcaacaccagttgcattgaggttgcagtgtagcaaaagctttccttgcagtggaata
aggcttcaagacgttgagctaacttataacaatcagtcagccacatcatcatgcgctaat
gctgcaggagaagcatctggcgttatgaagccttctagctgtttatag
DBGET
integrated database retrieval system