Daucus carota (carrot): 108199044
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Entry
108199044 CDS
T05350
Name
(RefSeq) THO complex subunit 2
KO
K12879
THO complex subunit 2
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03013
Nucleocytoplasmic transport
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108199044
09122 Translation
03013 Nucleocytoplasmic transport
108199044
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108199044
03041 Spliceosome [BR:
dcr03041
]
108199044
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
108199044
Spliceosome [BR:
dcr03041
]
Complex C
Other components
EJC/TREX
108199044
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
108199044
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Tho2
THOC2_N
Thoc2
FapA
Motif
Other DBs
NCBI-GeneID:
108199044
NCBI-ProteinID:
XP_017222292
LinkDB
All DBs
Position
8
Genome browser
AA seq
1835 aa
AA seq
DB search
MSLPPVECVYVTEECLKEWKNGNPSFKLNQSVPIVRFLYELCWSMVRGDLPFQRCKLALD
SVEFCDREADEGVASDFTDIVTQMAQDLTMPGEYRSRLIKLAKWLVECSLVPLRLFQERC
EEEFLWDCEMIKIKAADLKSKEVRVNTRLLYQQTKFNLLREESEGYAKLITLLCGRPEAS
SQNGSAATVGIIKSLIGHFDLDPNRVFDIVLECFELQPDNVVFLDLIPIFPKSHASQILG
CKFQYYQRMEVSSAVPFGLYQLTALLVKKDFIDLDGIYSHLLPRNDDAFEHYNSFVAKRL
EEANKIGKINLAATGKDLMDDEKQGDVNVDLFAALDMETEAVEERSSELENSQTLGLLAG
FLSVDDWYHSHVLFDRLSPLNPVEHIQICNRLFRLINNSISSAYKLVHQMQLQNAGSHSR
SSADIGDTTPYVHRKFIDLPKELFEMLSCAGPYLYRDTLLLQKVCRVLRGYYLSALEFSK
SGESAFKSDNASFLNKAPRVHLREARLRIEESLGACLLPSLQMIPANPAVGQEIWDVLNL
LPYEARYRLYGEWEKDDEGTPMVLSAKQTAKLDTRRILKRLAKENLKQLGRMVAKLAHAN
PMTVLRTIVHQIEAYRDMITPVVDAFKYLTQLEYDILEYVVIERLALVGREKLKDDGLNL
SDWLQSLASFWGHLCKKYPSMELRGLFQYLVNQLKKGNGIELVLLQELIQQMANVQYTEN
MTEEQLDAMAGSETLRYQATSFGVPRNNKALVKSTNRLRDSLFPKEEPKLAVPLLLLIAQ
HRSVVVISADAPHIKMVSEQFDRCHGTLLQYVEFLASAVTPATAYAQLIPTLDDLIHLYH
LDPEVAFLIYRPVMRLFKCQTSSEVFWPLHCDESANTEKDVATNPSSQPVLDLGASRKPI
TWSALLDTARSMLPPKAWNSLSPDLYATFWGLTLYDLYVPRNRYESEISKLHSALKALEE
LSDNSNSAITKRKKDKERIQESLDRLTSELQKHESNVASVRRRLSQEKDKWLSSCPDTLK
INMEFLQRCIFPRCTFSMPDAAYCAMFVHTLHSLGTPFFNTVNHIDVLICKTLQPMICCC
TEYEVGRLGRFLFETLKTAYHWKSDESIYERECGNMPGFAVYYRYPNSQRVTYGQFIKVH
WKWSQRITRLLIQCLESPEYMEIRNALILLTKISAVFPVTRKSGINLEKRVAKIKSDERE
DLKVLATGVAAALAARKSSWVTEEEFGMGYLELKPVLPIAPKSLAGNVAPPHNGSAVNVA
ANEPAGGRIKPADGKSERTESLSATAKSVENQKQGEESGNKTLEENTLRVFGKTSFESEG
RAASKRSLAAGSLSKQTRQDLTKDDGKAGKTIGRAAGTFSTGDRDLSTHDPSEGRQTSSL
NITSAHSSNGLASAKVSAATTRSSDFHGNETKSEGGAVKAIDSRLPSVREEGNEVSESQR
QSSRLVQSPRNEFANPKPVDKPHKRVNQAEELDRLSKRRKGDTDSRELEADIRFPDRERS
IDQRVVDKPSPADIDRRGLDEQISSRAVDRLKEKVGERYDRDHRDRIERPEKSRGDDNIS
EKSRDRSMERYGRERSVDKLQERGIDRGFDRLTEKSKDERNKDDRIKSRYNDTSLEKLHA
DDRFHGQSLPPPPPLPAHMVPQSVSSGRRDDDGDRRLGTARHSQRLSPRHEERERRRSEE
NTSLLQDEAKRRREDEFRDRKREERDVFPLKVEERDREREREKANLSKEDLDANASKKRK
IKREPLQAEAGEYLPSGPPPPLTINLSQPYDGRERVDRKAAMPQRAGYIEEPGLRGHGKE
TINKMTRRDAEQMYNDRDWDDEKRQRVEQKRRHRK
NT seq
5508 nt
NT seq
+upstream
nt +downstream
nt
atgtctctacctcctgtagagtgtgtgtacgttactgaagagtgcttgaaggaatggaaa
aatggaaaccctagcttcaagttgaatcagtcggtgccgattgttcggttcctctacgag
ctttgctggtccatggttcgtggtgacttgccgtttcagaggtgcaaattggcgctggat
tcggtggagttctgtgatagggaggcggatgagggcgtcgcgtcggatttcacggatata
gtgactcaaatggctcaggatcttacaatgcccggagaatatcgcagccgactcattaaa
cttgcgaagtggcttgttgaatgttctttggttcccctgaggctttttcaggagcgctgt
gaggaagaatttttgtgggattgcgaaatgatcaagataaaggctgcagatttaaaatca
aaagaggtgagagtaaacactcgtcttctgtatcaacaaaccaaattcaaccttctacga
gaagaaagtgaaggttatgctaagctgatcacccttctttgtgggagaccagaagcttca
tctcagaatggatcagcagcaacagttggaattattaagtcattgatcggacattttgat
cttgatccgaatcgtgtttttgacattgtattggagtgtttcgaattacagcccgataat
gtcgtctttttggaccttattccaattttccccaagtcccacgcatcacaaatactaggg
tgcaagtttcagtattatcagcggatggaagttagtagtgctgtaccatttggactttat
cagcttacagctctgctggttaaaaaagactttattgatcttgacggcatatactcacat
ttacttccgaggaatgatgatgcatttgagcattataattctttcgttgcaaagcgatta
gaagaggccaacaaaattggaaaaataaatcttgctgcaacaggaaaagatcttatggat
gatgagaaacagggggatgtgaatgtagatctgtttgctgctttagacatggaaactgag
gcagttgaggaacgttcttcagagttggagaatagtcagacattggggttgcttgctgga
tttctttcggtggatgactggtatcattcccatgtactgtttgaccgtctctcccctcta
aatccggtagagcacattcagatctgcaacagattgtttaggcttatcaataattcaata
tcttcagcatataagcttgtccatcaaatgcaacttcaaaatgctggttcacactcgagg
tctagtgctgatattggggatacaactccatatgtccatcggaaattcattgatctccct
aaggagctttttgagatgttgtcctgtgcaggaccttatctttatcgtgatactttattg
ttgcaaaaggtgtgtagagtattaaggggctattacctctctgctctggagttttccaag
tctggtgaaagtgccttcaaatcagataatgcttcttttctgaacaaagctcctcgtgtg
cacttgagagaggcaaggttaaggattgaggaatccctaggagcttgtctacttccttct
ttacagatgatacctgcaaatcctgctgtagggcaagaaatttgggatgtgctgaatctc
cttccgtatgaggcgaggtaccggttatatggagaatgggaaaaggatgatgagggcact
cctatggttttgtccgcaaagcagacagcaaagttggataccagaaggattttaaaacgg
cttgcaaaagaaaatcttaagcagctaggccgaatggttgcaaaactagctcatgccaat
ccaatgacagttttaagaaccattgttcaccagattgaggcttacagggatatgatcact
ccagttgtagatgcattcaaatacttgacacagctggagtatgatatccttgaatatgtt
gtgattgagcgtttggcactagttggacgggagaaactaaaagatgacggtcttaattta
tccgattggcttcaatcattggcttcattttggggtcatttgtgtaaaaaatatccttca
atggaattgcgtggtctttttcagtatctcgtcaatcagttaaaaaaaggaaatggtatt
gagcttgtactcttgcaggaacttatacagcaaatggctaatgttcaatacacggagaac
atgacagaggaacaacttgatgcaatggcaggaagcgagactttgcggtatcaagcgact
tcttttggggtaccccgaaataataaggctttagttaaatccacgaacaggctgagggat
tccttatttccgaaagaagaaccaaagttggcggttccccttttactattaattgctcag
catcgttctgtggttgttattagtgcggatgcacctcacattaagatggtgagcgagcaa
tttgatagatgccatgggacccttcttcagtatgttgaattcttagctagtgcagttacg
ccagcaacagcttatgctcaactgattcccactcttgatgatcttatacatctatatcac
cttgatcctgaggtggcatttttaatttatcgacccgtgatgaggctgtttaaatgtcag
actagttctgaagtcttttggcctttacattgtgatgaaagtgcaaacacggaaaaagat
gtggctacaaatccatcgagccaacctgttcttgatcttggcgcttcaaggaaacctatt
acgtggtctgctctcctggacactgctagatcaatgttacctcctaaggcttggaatagc
ctctctcctgacctgtatgccaccttttggggtcttacattatatgatctgtacgttcct
agaaaccgatatgagtcagaaataagcaagctgcattctgcacttaaggcgttggaagaa
ctctctgataattcgaactcagcaatcaccaaaagaaagaaagataaggaaaggattcaa
gagtctttagaccgattgactagtgaattgcagaagcatgaatcaaatgttgcatctgtt
cgcaggcgactcagtcaagaaaaagataagtggttaagctcttgtcctgataccctgaaa
ataaatatggaattccttcagaggtgtatctttccacgatgtacattcagtatgcctgac
gccgcttactgtgctatgtttgtacatactcttcactcccttgggactcccttttttaat
actgtcaaccacatcgatgttctaatatgcaagactttacaacctatgatttgttgctgt
accgagtacgaagtgggtcgacttggaaggtttttgtttgagacactgaagactgcttat
cactggaagagtgatgaatcaatatatgaacgggagtgcgggaatatgccaggttttgct
gtatattatcgatatccaaacagtcagcgtgttacatatggccaatttattaaggtgcac
tggaaatggagtcaaaggattaccagattacttatacagtgcttggagtcaccagagtac
atggaaatacgaaatgctctaatactgttaaccaaaatatctgctgtatttcctgtcaca
cgaaagagtggtatcaatcttgaaaaacgtgttgcgaaaataaaaagtgacgaaagagaa
gatctgaaggtgttggccacaggtgttgctgcagctttggctgcaagaaagtcatcatgg
gttacagaagaagaatttggtatgggttatctcgaattaaagccagtacttcctattgct
ccaaagtctctggctggtaacgtagctcctccacacaatggttctgctgttaatgtagct
gcaaatgaacctgctggaggaagaataaaacctgctgatgggaaatcagaaagaacagaa
agtttatctgccacagctaaatcagtagaaaaccaaaagcagggagaggaatctggaaat
aaaacactggaggagaacacgttgagagtttttgggaagacatcattcgaatctgaggga
agagccgcatcgaaaaggtcacttgctgctggatctctttctaagcaaacaaggcaagat
cttacaaaggacgatggtaaagctgggaaaacaattggtagagcggcaggtaccttttcc
actggtgaccgagacctttcaacacatgatccatctgaagggcgacagacatcgtcgctt
aacattacttcagcacacagtagcaatggcttagcttcagctaaagtatctgcagctact
acacggtcttcagatttccatggcaatgaaacgaagtcagagggtggggctgtaaaagct
attgattcaaggcttccttctgtaagagaggagggcaatgaagtttctgagtcacaaaga
cagtcctctcggctagtccagtcgcctaggaatgaatttgctaatccaaaacctgttgat
aagcctcataagagagtaaatcaagctgaggaactagataggctgagtaaacgcaggaaa
ggcgataccgattcaagagaattggaggctgacatccgatttcctgaccgagaaaggtca
attgatcaacgagtagttgataaaccgagtcctgctgatattgatagacgaggtttggat
gagcaaataagcagcagggctgttgatagactaaaagaaaaagttggcgagaggtatgat
cgagatcacagagacagaattgaacgaccggaaaaatctcgaggtgatgataacatttcg
gaaaaatcacgggataggtccatggaaagatatggaagagagcgttctgtagataaattg
caggagagaggtatcgataggggctttgataggcttactgaaaaatcaaaggatgaaaga
aacaaagatgacaggattaagtcaagatataacgacacatctctagaaaaattgcatgct
gatgaccggtttcatgggcaaagcttgccaccaccaccacctttacctgcacacatggtt
ccacagtcagttagctcgggaagaagagatgatgatggtgatagaaggttaggtactgcc
aggcacagtcaaagactctcccctcggcatgaagagagggaacgaaggcgatctgaggag
aatacctctctattgcaagatgaagccaaacgtcgtagagaagatgaatttcgtgatagg
aagagggaagaaagagatgtctttccattaaaggttgaggagagggatagggaaagagaa
agggagaaagcaaatctttcaaaggaggacttggatgcaaatgcatctaagaaaaggaaa
atcaaaagggagcccctgcaagctgaagctggtgaatatcttccatcagggccaccgccg
cctcttactataaatttgtcgcagccttatgatggtagagaacgggtagaccggaaagca
gccatgcctcagcgtgctggttacattgaagaacctggactgcgaggtcatggcaaggaa
acaattaacaagatgacccgacgtgatgcagaacaaatgtataatgacagggactgggat
gacgagaagagacaaagagttgagcaaaagagaaggcaccgcaaatag
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