Daucus carota (carrot): 108199238
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Entry
108199238 CDS
T05350
Name
(RefSeq) ISWI chromatin-remodeling complex ATPase CHR11-like
KO
K11654
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily A member 5 [EC:5.6.2.-]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108199238
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108199238
03036 Chromosome and associated proteins [BR:
dcr03036
]
108199238
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase I system
Other transcription-related factors
NoRC (nucleolar remodeling complex)
108199238
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Chromatin remodeling factors
CHRAC complex
108199238
RSF complex
108199238
WICH complex
108199238
B-WICH complex
108199238
NORC complex
108199238
BRF complex
108199238
NuRF complex (fruit fly)
108199238
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
SLIDE
Helicase_C
ResIII
HAND
DEAD
HDA2-3
Myb_DNA-binding
DBINO
CHDII_SANT-like
Myb_DNA-bind_6
AAA_14
ToxN_toxin
Motif
Other DBs
NCBI-GeneID:
108199238
NCBI-ProteinID:
XP_063938842
LinkDB
All DBs
Position
8:27655390..27663621
Genome browser
AA seq
1043 aa
AA seq
DB search
MAKLSDHSSDDSPAESSEQEQLPVNEEEDEEELEAVARTVATDDDDFADEQDDVQDNEED
DAGATGEISKREKARLREMQRLKKQKIEEILADQNAAIDADMNNKGKGRLKYLLQQTEIF
AHFAKGDQSSSQKAKGKGRHASKLTEKEEDEEYLKEEEDELAGGGGTRLLVQPSCIQGKM
RDYQLAGLNWLIRLYENGINGILADEMGLGKTLQTISLLGYLHEFRGITGPHMVVAPKST
LGNWMNEIKRFCPTLRAVKFLGNPDERRYIREELLVAGKFDVCVTSFEMAIKEKTVLRRF
SWRYIIIDEAHRIKNENSLLSKTMRLFHTNYRLLITGTPLQNNLHELWSLLNFLLPEIFS
SAETFDEWFAISGENDQEEVVQQLHKVLRPFLLRRLKSDVEKGLPPKKETILKVGMSQMQ
KQYYKALLQKDLEVVNAGGERKRLLNIAMQLRKCCNHPYLFQGAEPGPPYTTGDHLITSA
GKMVLLDKLLPKLKERDSRVLIFSQMTRLLDILEDYLMYRGYLYCRIDGNTGGDDRDASI
DAFNKPGSEKFVFLLSTRAGGLGINLATADIVILYDSDWNPQVDLQAQDRAHRIGQKKEV
QVFRFCTEYTIEEKVIERAYKKLALDALVIQQGRLAEQKTVNKDELLQMVRFGAEMVFSS
KDSTITDEDIDRIIAKGEEATAELDAKMKKFTEDAIKFKMDDTADLYDFDDDKDENKVDF
KKIASDNWIEPPRRERKRNYSEAEYFKQTMRQSGPARPKEPRIPRMPQLHDFQFFNTQRL
TELYEKEVRFLMQVNQKNQSKDTIEADEPEEMGDPLTAEEQEEKEQLLEEGFSTWSRKDY
NTFLRACEKYGRNDVKGIASEMEGKSEEEVERYSKVFQERYKELNDYDKVIKNIERGEAR
ISRKDEIMKAIGKKLDRYKNPWLELKIQYGQNKGKLYNEECDRFMICMIHRLGYGNWDEL
KAAFRTSPLFRFDWFVKSRTTQELARRCDTLIRLVERENQEFDERERQARKEKKLAKNTA
PSKRTLTKQAESPPPTNKKKRSS
NT seq
3132 nt
NT seq
+upstream
nt +downstream
nt
atggccaaactctccgaccactcctccgacgattctccggccgaatcgtcggagcaagag
cagctcccagtcaacgaggaggaagacgaggaggagcttgaagctgtcgccagaactgtt
gccaccgacgacgacgacttcgcagatgaacaggacgacgttcaagataacgaggaagat
gatgcgggggctactggtgaaattagcaagcgagagaaagctaggttgagagaaatgcag
aggttgaagaaacaaaagatagaagaaatattggctgaccagaatgctgctattgatgcc
gacatgaataacaagggaaagggacgtctcaagtacctgttgcagcaaacggagatattt
gctcactttgcaaaaggagaccaatcttcttcgcagaaggcaaagggaaaaggtcgacat
gcatctaaacttacagaaaaggaagaagatgaggaatatctgaaagaggaggaagacgaa
cttgctggaggcggcggcacaaggctactagtgcagccctcatgtattcaggggaagatg
agggactaccaacttgcggggctaaattggcttattcgtctatatgagaatggtattaat
ggaatccttgctgatgaaatgggtcttggtaagacattgcaaaccatctccttgcttggt
tatttgcacgaatttagaggaattactggtccgcacatggttgttgctccaaaatctact
cttggaaattggatgaatgaaataaagaggttttgccctacattacgtgcggtcaaattt
cttggaaatcctgatgaacggcgttacatacgtgaagaattgttagttgctgggaagttt
gatgtttgtgttaccagttttgagatggcgatcaaagaaaaaactgtattacgccgtttc
agttggcgctatattataatcgatgaagctcaccggatcaagaatgagaattcactactt
tcaaaaaccatgagactgtttcatactaattatcgcctcctcatcactgggactcctctt
cagaacaatcttcatgaactctggtcactcctgaactttctacttccggagatttttagt
tcagcagaaacttttgatgaatggtttgcaatctctggggaaaatgaccaggaagaggtt
gttcaacagcttcacaaggtcctccgaccattccttctgagaaggttgaagtcagatgtt
gagaagggcttgcctccaaagaaggagacaatactcaaggttggtatgtcccagatgcag
aagcagtattataaggctttattacagaaggatctcgaggttgtaaatgctggtggagag
cgaaagcgccttctgaatatagctatgcagctacgtaaatgttgtaaccatccatatctt
ttccaaggtgcagaacctggtccaccgtatacaacaggagatcatcttataacgagtgct
gggaaaatggttttgctagacaagttgctcccaaaacttaaagaacgcgattcacgggtt
ctaatattttctcagatgacaagactgcttgatatcctggaagactatctgatgtatcga
ggatatctgtactgtcggattgatggtaatactggtggtgacgatcgtgatgcttctatt
gatgccttcaacaagccagggagcgagaaattcgttttcttattgtcaacaagagctgga
ggacttggaattaatctggcaactgcagatattgtcatattgtacgacagtgattggaat
cctcaagttgatttgcaggctcaggatcgtgcccacaggattgggcagaaaaaagaagtt
caagtttttcgtttctgcactgagtataccattgaggagaaggttattgaaagagcctat
aagaaacttgcacttgatgcattggtaatccaacaaggacgattagctgagcaaaaaact
gttaacaaagatgagctattgcaaatggttaggtttggtgcggagatggtttttagttct
aaagatagcactattacagatgaggatatagacaggatcatcgctaaaggggaagaggca
actgctgaacttgatgccaaaatgaagaagtttactgaggatgccattaaatttaaaatg
gatgatactgcagacctctatgattttgatgatgataaggatgaaaacaaggttgatttc
aagaaaattgccagtgataattggattgaacctccaagaagagagcggaagcgcaattac
tcagaagcagagtattttaagcaaacaatgcgccaaagtggtccagcaagaccaaaagag
cctcgaattcctcgcatgccacagttgcatgactttcagttctttaatacacagaggctt
actgagttgtatgaaaaagaagttcgctttcttatgcaagttaatcagaagaatcaatca
aaagatacaattgaagcggatgagcctgaagagatgggagaccctttgaccgctgaggaa
caggaagagaaggagcagttgttggaagagggcttttcaacatggagcagaaaagactac
aatacttttcttagggcatgtgagaaatatggccgtaatgatgtaaaaggtattgcgtct
gaaatggaaggaaaatcagaggaagaagtcgaaagatattccaaagtttttcaagagaga
tacaaagagttaaatgattatgacaaagtcatcaagaatattgaaagaggagaggcaagg
atatcccgtaaggatgagataatgaaagcaatagggaagaagctggaccgttataagaat
ccttggttggaactaaaaatacagtacggtcaaaacaaggggaaattgtataatgaagag
tgtgatcgttttatgatctgcatgattcacagacttggttatgggaactgggatgagctg
aaagcagcatttcgtacttctccgttatttcgctttgattggtttgttaagtctcgcact
actcaggagcttgcaagacgatgtgacacactcattcggttggtggagagagaaaaccaa
gaatttgacgagcgggaaagacaggctcgcaaagagaagaaacttgccaagaacacagca
ccgtcaaagcgtactttgacaaagcaggccgaaagcccccctcccactaataagaagaaa
agaagcagctaa
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integrated database retrieval system
