KEGG   Daucus carota (carrot): 108199316
Entry
108199316         CDS       T05350                                 
Name
(RefSeq) uncharacterized protein LOC108199316
  KO
K12828  splicing factor 3B subunit 1
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108199316
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dcr03041]
    108199316
   03036 Chromosome and associated proteins [BR:dcr03036]
    108199316
Spliceosome [BR:dcr03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    108199316
 Complex B
    108199316
 Complex C
   U2 SnRNP specific factors
    108199316
Chromosome and associated proteins [BR:dcr03036]
 Eukaryotic type
  Chromatin remodeling factors
   B-WICH complex
    108199316
SSDB
Motif
Pfam: SF3b1 PPP2R1A-like_HEAT TOR1L1_N HEAT_EZ HEAT HEAT_EF3_N HEAT_ECM29 HEAT_2 Htt_N-HEAT_1 Cnd1 XMAP215_CLASP_TOG Vac14_Fab1_bd Adaptin_N
Other DBs
NCBI-GeneID: 108199316
NCBI-ProteinID: XP_017222573
UniProt: A0A175YQS7
LinkDB
Position
8:31810585..31815594
AA seq 1266 aa
MDAEIAKAQEERKKLEQQLASEQLASLNSVTFDTDLYGGNNPFEGYEKSIPVNEDEENLD
TVDSQVPRRLASYTAPKSIMNDMPRGGDDDEALGFKKPQKIIDREDDYRRRRLNRVISPE
RHDAFANGDKTPDVSVRTYADVMREEALKRKKEETLKLIADKKKEEEAEKEKKPADSQAT
QKRRNRWDQSQEDSNAKKAKASSDWDLPDSTPGIGRWDATPTPGRVGDATPSLSRKNRWD
ETPTPGRVADSDATPIGGGLTPGATPAGMTWDATPKLGGMATPTPKRQRSRWDETPATMG
SATPGATPAAAYTPGVTPVGGVELATPTPGAINMRGAITPEQYNLLRWEKDIEDRNRPLT
DEELDIMFPQEGYTILDPPASYVPIRTPARKLLATPTPMGTPLYAIPEENRGQQFDVPKE
LPGGLPFMKPEDYQYFGALLNEEDEEELSPDEQKERKIMKLLLKVKNGTPPQRKTALRQL
TDKAREFGAGPLFNRILPLLMQPTLEDQERHLLVKVIDRVLYKLDELVRPYVHKILVVIE
PLLIDEDYYARVEGREIISNLSKAAGLATMIAAMRPDIDNIDEYVRNTTARAFSVVASAL
GIPALLPFLKAVCQSKKSWQARHTGIKIVQQIAILIGCAVLPHLRSLVEIIEHGLNDENQ
KVRTITALSLAALAEASAPYGIESFDSVLKPLWKGIRSHRGKVLAAFLKAIGFIIPLMDA
IYASYYTKEVMVILIREFQSPDEEMKKIVLKVVKQCVSTEGVEADYIRSDILPEFFRNFW
VRRMALDRRNYKQLVETTVEVANKVGVADIVGRIVEDLKDESEPYRRMVMETIEKVVADL
GASDIDARLEELLIDGILYAFQEQTSDDANVMLNGFGAVVNSLGQRVKPYLPQICGTIKW
RLNNKSAKVRQQAADLISRIAVVMKQCQEEQLMGHLGVVLYEYLGEEYPEVLGSILGALK
AIVNVIGMTKMTPPIKDLLPRLTPILKNRHEKVQENCIDLVGRIADRGAEFVPAREWMRI
CFELLEMLKAHKKGIRRATVNTFGYIAKAIGPQDVLATLLNNLKVQERQNRVCTTVAIAI
VAETCSPFTVLPALMNEYRVPELNVQNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALM
DRDLVHRQTAASAVKHMALGVAGLGCEDALVHLMNYVWPNIFETSPHVINAVMEAIEGMR
VALGAAVVLNYCLQGLFHPARKVREVYWKIYNSLYIGAQDALVAAYPTLDDEESNIYSRP
ELTMFV
NT seq 3801 nt   +upstreamnt  +downstreamnt
atggacgcggagattgcaaaggcacaggaagagaggaagaagctggagcagcagctagca
tctgaacagcttgcatcccttaactctgttacttttgatactgatctttatggagggaac
aatccttttgagggttatgagaaatctattcctgttaatgaggatgaagagaatcttgac
actgtggattcacaggttccgaggaggcttgcgtcttacacggctccgaagtctattatg
aatgatatgccgagaggtggagatgatgatgaggcgttgggcttcaagaagccgcaaaag
attattgacagggaggatgattataggaggagaaggctgaatagggtgatttcaccagag
cgacatgatgcgtttgctaatggggataagacccctgatgtttctgtgaggacatatgcg
gatgttatgagggaggaggctttgaagaggaagaaagaggagacgttgaaattgattgcc
gataagaagaaagaagaggaggcagagaaggagaaaaaacctgctgattcacaagccact
caaaagagaaggaacaggtgggatcaatctcaggaggattcaaatgctaaaaaagctaaa
gcttcttctgattgggatttgcctgattcgactccagggattggaaggtgggatgcgacg
cctacacctggaagggtcggtgatgcgaccccgtccttatccaggaaaaataggtgggat
gagactccaactccaggtagagttgctgattctgatgccacaccaattggtggcggttta
actcctggtgctacaccagctggaatgacttgggatgctacgccaaagcttggtgggatg
gctacccctaccccaaaacgtcagaggtcaaggtgggatgaaacacctgcaaccatggga
agcgctacacctggtgctacgccagctgcagcttacacaccaggagtgactcctgtcgga
ggagttgaacttgctacaccaactcctggagctataaacatgcgaggtgctatcacccct
gaacagtataacttgttgaggtgggagaaagatattgaagacagaaatcgtccattgact
gatgaagaacttgatataatgttccctcaagagggatacacaattttagaccccccagct
tcttatgtccctattagaactcctgcaaggaagctacttgctaccccaactccaatggga
actccactctatgcaattcctgaggagaataggggccagcaatttgatgttccaaaagaa
ttgcctggtggtttgccattcatgaagcctgaagattaccagtacttcggagctttgctg
aatgaggaggatgaagaagagctctctcctgatgagcagaaggaacgaaaaattatgaaa
ctgttgcttaaggtgaagaatggaacacctccgcagcgcaaaacagctctgagacagctc
actgacaaggcccgggagtttggtgcaggtccattgtttaaccggattctcccactcctc
atgcaacctactctggaagatcaggaaaggcatcttttagtgaaagtcattgatagagtt
ctatataagctggatgagttggtacgtccttatgtacacaaaattctggtcgtgattgag
cctttgttaattgatgaggattactatgcccgtgtagaaggaagagaaataatatctaat
cttagcaaggcagctggtcttgccacaatgattgctgcaatgcgtcctgatattgataac
attgatgagtatgttcgaaacaccactgctagagctttcagtgtcgttgcatcagctctt
gggatccctgccctattgccatttctgaaagctgtatgtcaaagtaagaagtcgtggcaa
gctcgtcacacgggtatcaagattgttcaacaaattgctatactgattggctgtgcagtt
cttcctcacttgcgatctcttgtagaaattattgaacatggtctaaatgatgagaatcag
aaggtcagaactatcacggcgctgtctttagcagctcttgctgaggcttctgctccatat
ggtattgagagctttgactcagttttgaagccactgtggaagggtatcaggtcacaccgt
gggaaagtgttagctgcctttttgaaggcaattggtttcattataccacttatggatgca
atatatgctagctactatacaaaagaagtcatggttatcttgatccgtgagtttcagtca
ccagatgaagaaatgaagaagattgtgctaaaagtggttaagcagtgcgttagcaccgaa
ggtgttgaggctgactatattcgaagtgatatcttgcctgaatttttccgcaacttttgg
gttcgaaggatggctctggatcgtagaaattataagcagcttgttgagacaactgttgaa
gtggcaaataaagttggggttgctgatattgttggaagaatagtggaagatcttaaagac
gagagtgaaccttataggcgaatggttatggagacaattgagaaggtcgtagctgatttg
ggtgcatccgatattgatgctcgcttggaagagcttctgattgatggcatcctttatgca
ttccaagagcagaccagcgatgatgctaatgtgatgcttaatgggtttggtgcagttgtg
aattctttagggcagagggtgaagccttaccttccccagatatgtggtacaatcaagtgg
cgtctgaataacaagagcgcgaaagtgaggcagcaggcagcagatctcatttctcgaatt
gcagtggtcatgaagcagtgtcaggaagagcaactcatgggacatcttggggttgtcttg
tacgagtatttaggagaagaataccctgaagtcttgggatcaatactgggagcactaaaa
gcaattgtgaatgtcattggtatgacaaaaatgactcctccgatcaaggatttgcttccg
cgactgaccccaattttgaaaaatcggcatgagaaggttcaggagaactgtattgatctt
gttggtcgaattgctgatcgtggagcagaatttgtccctgcaagggagtggatgagaata
tgctttgagcttcttgagatgcttaaagcccacaaaaagggaattcgccgggcaacagtg
aacacctttggatacattgcaaaagctatcggaccacaagatgtgctagcaaccttgctg
aataatctcaaggttcaagagcgccagaaccgtgtttgtacaacggttgcaattgctata
gttgcagaaacctgttccccgttcacagtattacctgcattgatgaacgagtatcgtgtt
cctgagctaaatgtgcagaatggtgtcctgaaatccttgtccttccttttcgagtatatt
ggtgaaatgggtaaagattacatatatgctgtgactccattacttgaagatgctctcatg
gacagagatctggttcacaggcaaaccgctgcctcagctgtcaagcacatggctttgggt
gtggctgggctgggatgtgaggatgcgttagttcacttgatgaactatgtctggccaaac
atattcgagacttcacctcatgtcataaacgcagtcatggaagccattgaaggaatgagg
gttgcattaggtgcggctgttgtactcaactactgtctacagggactgttccatcctgcc
agaaaggttagagaagtatactggaaaatttacaactcgctctatattggtgctcaagat
gccttggttgcagcttatcctacactcgatgacgaggaaagcaacatttacagcaggccg
gaattgacgatgttcgtgtag

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