Daucus carota (carrot): 108199324
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Entry
108199324 CDS
T05350
Name
(RefSeq) rRNA 2'-O-methyltransferase fibrillarin 1-like isoform X1
KO
K14563
rRNA 2'-O-methyltransferase fibrillarin [EC:2.1.1.-]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03008
Ribosome biogenesis in eukaryotes
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
108199324
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
dcr03009
]
108199324
Ribosome biogenesis [BR:
dcr03009
]
Eukaryotic type
Sno RNPs
Box C/D snoRNPs
108199324
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Fibrillarin
NOP5NT
Motif
Other DBs
NCBI-GeneID:
108199324
NCBI-ProteinID:
XP_063938728
LinkDB
All DBs
Position
8:22098784..22103223
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AA seq
441 aa
AA seq
DB search
MAYILDLSRKRKGDDDCRELTLGEVTRIRRGKVMPIHLLFECATGYALVLARGITEVGMN
KFESVEEYLNQSEQPFELESYLPFSSVENALIQMNAISKSLVTDQLQKFLEDALPQPKTG
GSMYTVGVGDSMLGAMIIRKTGLCVRSARLISDVMRGLRMKIDQLIGLGHGELERAQFNL
ARLYNRTCTQKVIKRPILVSSFSSLKKQIGVVPFRFEGVFKTKGKDNMLCTKNLVPGEAL
YGEELMRVQNEGDITEVEYRVWNPLRSKLSAAIMYGVTNIWIKPGSRVLYLGNVCGLTVS
NLSDLVGSDGMVYVVGNIDDVVGMAGTRPNVVTIIEKFWNHGNYRMLVSTVDVIFAETDR
HLDEYVAETLFMVNNVRFYLRAGGHYMISTRANNLNSTGQVKDVFTIHFQRKEFKQIETI
MLNLMEGACSLVVGSYRLLDD
NT seq
1326 nt
NT seq
+upstream
nt +downstream
nt
atggcttatatcctcgacctatcgcgaaaaagaaaaggtgatgatgattgtagagagcta
acactcggagaagttactcgtatccgaagagggaaagttatgccgattcatctacttttt
gaatgtgccaccggatatgcccttgttcttgcccgtggaatcactgaagttgggatgaac
aaatttgaatcagttgaggagtacctcaaccaatcagagcagccctttgagcttgaatct
tatctaccattttcatcggtcgagaatgccctaattcaaatgaatgctatttccaagtca
ctcgtgactgatcagttacagaaatttctcgaggatgctcttccacaaccaaaaacggga
ggaagtatgtataccgttggagttggtgattcaatgctgggagcaatgattataaggaaa
acaggactatgtgttcgaagtgctagactgattagtgatgtcatgcgtggcttgcggatg
aaaattgatcaactgataggcttggggcatggtgaattggaaagggctcaatttaatctg
gcgcgcctttacaaccggacgtgtactcaaaaagtcatcaaaaggccgatcttggtttca
tcattttcttcgttaaaaaaacaaattggggttgtgccatttagatttgaaggtgttttc
aaaaccaagggtaaagacaacatgttgtgcaccaaaaatttagtacccggcgaagctctt
tatggtgaagaattaatgcgtgttcagaatgagggggacataactgaagtcgagtacaga
gtgtggaatcccctcagatcgaaattaagtgccgcaatcatgtatggtgttacgaacata
tggattaaacccggctctcgtgttttatacttgggaaatgtatgtggacttacggtttct
aatctgtccgatcttgttggttcggatggtatggtctatgtagtggggaatattgatgat
gttgtaggcatggccgggacgaggcccaatgttgtgacaattatagaaaaattctggaat
catgggaattaccgcatgcttgttagtacggttgatgtgatctttgctgagactgatcgt
catctggatgagtatgttgcagagacgctatttatggttaataatgttcgtttctatctt
agagctggtgggcattacatgatctctacacgggcgaacaacctcaattcgactggtcaa
gttaaagatgtttttactattcatttccaacgaaaggaatttaagcaaattgaaacaatc
atgctgaatttgatggagggagcatgttccttggttgttggtagttatcgcttacttgat
gattaa
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