Daucus carota (carrot): 108199391
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Entry
108199391 CDS
T05350
Name
(RefSeq) regulator of nonsense transcripts UPF2
KO
K14327
regulator of nonsense transcripts 2
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03013
Nucleocytoplasmic transport
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108199391
03015 mRNA surveillance pathway
108199391
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108199391
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108199391
mRNA cycle factors
P-body specific factors
108199391
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MIF4G
Upf2
DUF1033
Vps8_C_schizo
GCR
Motif
Other DBs
NCBI-GeneID:
108199391
NCBI-ProteinID:
XP_063938603
LinkDB
All DBs
Position
8:22179581..22193353
Genome browser
AA seq
1193 aa
AA seq
DB search
MEHPENESRSGGEQSQGKPDDEEAGARLEEFKKSVEFKMTLRQSNLNPESPEPSFLRTLD
SSIKRNTAVIKKLKQINEEQRESLMDELRSVNLSKFVSEAVTAICEAKLRTSDIQAAVQI
CSLLHQRYKDFSPSLVQGLLKIFFPGKTLEDPDADKNSRAMKKRSSLKLLLELYFVGVVD
DCSVFVNIIKDLTSMEHLKDRDAAQTNLSLLSSFARQARFFLGLPLSGQEILEEFYKGLN
ITPEQKKFFKKAFHVYYDAAAELLQSEHTSLRQMEHENSKILNAKGELSEETATAYEKLR
KSYDHLYRGVSALAEALDMQPPVMPEDAHTTRVTTGEDASSPGPGKDSSTLEAIWDDEDT
RAFYECLPDLRAFVPAVLLGESESKVNDQSAKTHEQSSDLTTESDQQIVTQDIAEVSIGS
EVSQDCKNEKGKEKDDSNDKEKAKELEKGKEKEADRKGDAEKEKLKNPEGTNLDGLLQRL
PGCVSRDLIDQLTVEFCYVNSKSSRKKLVRALFSVPRTSLELLPYYSRMVATLSTCMKDV
SSMLIQLLEEEFNFLLNKKDQMNIETKIRNIRFIGELCKFKIAPAGLVFSCLKACLDDFT
HHNIDVACNLLETCGRFLYRSPETAVRMANMLEILMRLKNVKNLDPRHSTLVENAYYLCK
PPERSARVSKVRPPLHQYIRKLLFSDLDKSSIEHVLRQLRKLPWSECEPYLLKCFMKVHR
GKYGQIHLIASLTAGLSRYHDEFAVSVVDEVLEEIRVGLELNDYGMQQRRIAHMRFLGEL
YNYEHVDSSVIFDTLYLILVFGHGTAEEDVLDPPEDCFRIRMVITLLETCGHYFDRGSSK
RKLDRFLIHFQRYILSKGAVPLDIEFDLQDLFADLRPNMTRYSSVEELDAALAVLEEHER
KNLSEKNNTEKHLDTEKVSSGQLGRSSVNGQMLSDGVKANGEAHEEATEDTDTDSGSDTI
GPAGHYDEEELDEENHDETHDSEEDYSDGGDNASDEDDEVRVRQKITKVDPLEEADFDRE
FRALMQESLESRKLELRARPTLNMMIPMNIFEGPTKDHHGRGVEGESGDDTLDEEAGGSK
EVRVKVLVKRGSKQQTKEMFIPRDSTLVQSTKQKEAAELEEKQDIKRLVLEYNDREEEEL
NGLGNQPNSWIQSGGGRASSRGHAWDGHGGRGAGSRHRYHHHSGGGIFYSRRR
NT seq
3582 nt
NT seq
+upstream
nt +downstream
nt
atggaacatccagaaaacgagtctcgttctggtggtgaacaaagccaaggcaagccagat
gatgaggaagctggggctcgcctcgaagaatttaagaaatcagtggagtttaaaatgact
cttcgtcagagtaacctaaatcctgaaagtcctgagccaagtttcctcaggacactagat
tccagcattaagcgcaacactgcagttattaagaaactgaagcagattaatgaagaacag
cgtgaaagtttaatggatgaattgcgaagtgtcaacttaagcaaatttgttagtgaagca
gtgaccgctatctgtgaagcgaagcttagaacatcagacatccaagcagcagtccagatc
tgttctctgctccatcagaggtataaagatttctccccaagtttggttcaagggctccta
aaaatcttttttcctggaaaaaccctggaggacccagatgctgataagaattcaagggcc
atgaagaagcgcagctcgctcaaactccttttggaactatatttcgttggtgtggttgat
gattgtagtgttttcgtcaatattattaaggatcttacgagcatggagcacctaaaggat
cgtgatgcagctcagaccaatttgtcccttctttctagttttgctcggcaagctagattc
tttcttggacttccgctgtctggacaagaaattcttgaagagttttacaaaggacttaac
attacaccagagcagaagaaatttttcaaaaaggcttttcatgtatactatgatgcagcg
gcagagcttcttcagtcagagcatacgtcactgcgccaaatggagcacgaaaattcaaaa
atattaaatgcaaaaggcgagctaagtgaggagactgcaactgcatatgaaaagctccgg
aagtcgtatgaccatctatatcgtggtgtttctgctttagctgaagcccttgacatgcaa
cctcccgtgatgccagaggatgcccacacaactagggtcactacaggggaggatgcatca
tctcctggtcctgggaaagattcttctacccttgaagcaatatgggatgatgaagataca
agagctttctatgaatgcttaccagacctcagagcatttgttcctgcagtattattggga
gaatcagagtccaaggtgaatgatcaatctgcaaagacacatgagcaatcaagtgatttg
actactgaatcggaccagcagattgttacacaagatattgcagaggtttctataggttct
gaagtttcacaggattgcaaaaatgaaaaaggaaaggaaaaggatgatagtaatgataaa
gaaaaagccaaagaattagagaaaggaaaagagaaggaagctgatcgaaaaggtgatgct
gaaaaagagaaacttaaaaatcctgaaggaaccaatctggacggtttgttgcagaggctc
ccaggttgtgttagccgagacctaattgatcaattgacggtggagttttgctacgtgaat
tcaaaatctagtcgcaaaaagctcgtgagggctttatttagtgtccccaggacatctcta
gagttgctcccgtattattcgcgcatggtggctactctgtcgacttgtatgaaggatgtg
tcttctatgctcatacagttgttggaagaagaatttaactttttgctgaataagaaggat
caaatgaatatagaaactaagatccgcaatattcggtttatcggagaactctgcaaattt
aaaattgcacctgcgggccttgtttttagctgtctaaaggcatgtttggatgattttact
catcataatattgatgttgcttgtaatctccttgagacctgtggccgttttctttaccgt
tcacctgaaactgctgtacgcatggctaacatgctggagatattgatgcgcttaaagaat
gtgaaaaatcttgatcctcgtcacagcactcttgtagagaatgcttattacttgtgcaag
ccaccagaaagatctgcacgagtctctaaagttcgtcctccattacatcagtatattaga
aaacttctattctcggatcttgacaagtcatcaattgaacacgtgctgagacaacttcgt
aaactaccatggagtgaatgtgagccctatcttttgaaatgtttcatgaaggttcacagg
gggaagtatggtcagatacacttgattgcttcacttactgctggcttgagtagatatcat
gatgaatttgctgtttctgttgttgatgaggtcttggaagaaattagggttggcttggag
ttgaatgattatggaatgcagcaacggcgcattgcacacatgcgtttcttgggggaatta
tacaactatgaacatgtggattcctctgtcatttttgacacactttacttgattctcgtt
tttggccacggaacagctgaggaagatgtattggatccaccagaagattgtttccgtatc
aggatggttataacgcttcttgaaacatgtggacattattttgatcgaggttcctcaaag
agaaagcttgatagattccttattcactttcagagatacatattaagcaaaggagcagtg
ccactggatattgagtttgacttgcaggacttatttgcagacttgcgtcccaacatgacc
agatattcatctgttgaagagttagatgcagctctcgctgtacttgaagagcatgaacgt
aaaaatttaagtgaaaaaaataatactgagaaacacttggacacagaaaaagtatctagt
ggacaattggggcgtagttcagttaatggacaaatgctttcggatggtgtcaaggcaaat
ggcgaggcacacgaagaggcaacagaggacactgacacagactctggaagtgacacaatt
ggtccagctggacactatgatgaggaagagctggatgaagagaatcacgatgagactcat
gacagtgaagaggactactcagatgggggtgataatgcttctgatgaagatgatgaagtc
cgggttcggcagaagattacgaaagtggatcctttagaagaagctgacttcgatagagaa
ttcagagctctgatgcaggagagcttggagtcccgtaaattggaattgcgggctcggcca
actttgaatatgatgataccgatgaacatatttgaaggacctacgaaagatcatcatgga
agaggagtggaaggtgaaagtggtgatgatactttggatgaagaggcaggaggaagtaag
gaggttcgggttaaagttcttgtaaagcgtggcagcaagcagcaaacaaaagagatgttt
ataccccgagattccacacttgtgcaaagtaccaaacagaaagaagctgctgagcttgag
gagaagcaagacatcaaaaggttggttctggagtataatgatagagaggaggaggagctg
aatggattaggcaaccaaccaaatagctggattcaaagtggtggtggtagagcttctagc
cgaggccacgcatgggatgggcatggtgggaggggtgctggatcacgtcatcggtatcat
caccattctgggggtgggatattttatagcagaagaagataa
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integrated database retrieval system
