Daucus carota (carrot): 108199450
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Entry
108199450 CDS
T05350
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH12
KO
K12854
pre-mRNA-splicing helicase BRR2 [EC:
5.6.2.6
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108199450
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108199450
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108199450
Spliceosome [BR:
dcr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
108199450
Complex C
U5 SnRNP specific factors
108199450
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sec63
DEAD
WHD_SNRNP200
Helicase_PWI
ResIII
Helicase_C
BRR2_plug
AAA_22
AAA_30
Motif
Other DBs
NCBI-GeneID:
108199450
NCBI-ProteinID:
XP_017222756
UniProt:
A0A166HV25
LinkDB
All DBs
Position
1:41136114..41144693
Genome browser
AA seq
2179 aa
AA seq
DB search
MANLGGGAEAHARFKQYEYRANSSLVLTTDSRPRDTHEPTGEPESLYGKIDPKSFGDRAF
RGKPAELEEKMKKAKKKKEREPLDAEAVPRQSKRRRLQEESVLTTTDEGVYQPKTKETRA
AYEAMLSVIQQQLGGQPLNIVSGAADEILAVLKNDTFKNVDKKKEIEKLLNEIPNAMFDQ
LVSIGRLITDYQDGGGDAAGTGGAADGDDALDDDVGVAVEFEENEEEEEESDLDMVQDDE
DDEDDLADGHGSGAMQMGGGIDDDEGMEANEGMTLNVQDIDAYWLQRKISQAYEQQIDPQ
QSQKLAEEVLKILAEGDDREVETKLLVHLQFDKFNLIKYLLKNRMKIVWCTRLARAEDQE
ERKKIEEEMTQLGPDLAAILEQLHATRATAKERQKNLEKSIREEARRLKDESGGDVDRGR
RGISDRDADGGWLNGQRQLLDLESLAFNQGGLLMANKKCELPLGSYRNHNKGYEEVHVPA
LKPKPLAEGEKLIKISEMPDWARPAFEGMSQLNRVQSKVYDTALFSAENLLLCAPTGAGK
TNVAMLTILQQIALNRNADGSFNHSNYKIVYVAPMKALVAEVVGNLSNRLKQYDVNVKEL
SGDQTLTRQQIEETQIIVTTPEKWDIVTRKSGDRTYTQLVKLLIIDEIHLLHDNRGPVLE
SIVARTVRQIETTKEHIRLVGLSATLPNYEDVALFLRVDLKRGLFHFDNSYRPCPLAQQY
IGITVKKPLQRFQLMNDVCYEKVIGVAGKHQVLIFVHSRKETAKTARAIRDSALTNDTVS
RFLKEESATREILREHTELVKSSDLKDLFPYGFAIHHAGMNRGDRQLVEELFADGHVQVL
VSTATLAWGVNLPAHTVIIKGTQVYNPEKGAWTELSPLDVMQMLGRAGRPQYDTYGEGII
ITGHSELQYYLSLMNQQLPIESQFVSKLADQLNAEIVLGTVQNAKEACNWLSYTYLYVRM
LRNPTLYGLAPDALSKDLLLEERRADLVHTAATTLDKNNLIKYDRKSGYFQVTDLGRIAS
YYYITHGTITTYNEHLKPTMGDIELCRLFSLSEEFKYVTVRQDEKMELAKLLDRVPIPIK
ESLEEPSAKINVLLQAYISQLKLEGLSLTSDMVYITQSAGRLMRALFEIVLKRGWAQLTE
KALNLCKTVNKRMWSVQTPLRQFHGFPNEILMKMEKKDLAWERYYDLSSHELGELIRQRN
MGKMLHRCIHQFPKLVLAAHVQPITRTILKVELTITPDFLWEDKFHGYVEPFWVFVEDND
GEHILHHEYFLLKKQYVDEDHTLSFTVPIYEPLPPQYFIRVVSDKWIGSQTVLPVSFRHL
ILPEKYPPPTELLDLQPLPVTALRNPSYESLYQEFKHFNPVQTQVFTVLYNTDDNVLVAA
PTGSGKTICAEFAIMRNHQKGPDNVMRAVYIAPVEALAKERYNDWKKKFGEGLGMRVVEL
TGETAVDLKLLEKGQVIVSTPDKWDALSRRWKQRKQIQQVSLFVVDELHLIGGQGGPILE
VIVSRMRYIASQVENKIRIVALSTSLANAKDLGEWIGATSHGLFNFPPGVRPVPLEIHIQ
GVDIANFEARMQAMTKPTYTAIVQHAKNGKPAIVYVPTRKHARLTAVDLMTYSSIEGGEN
PMFILQSVTELEPFVDRIKEPMLRETLQYGVGYLHEGLSPTDQDIVRTLFETGWIQVCVM
TSSMCWGVPLRAHLVIIMGTQYYDGRENAHSDYQVTDILQMMGQASRPLVDNAGKCVIFC
HAPRKEYYKKFLYEAFPVESHLHHFLHDNLNAEVVVQVITSKQDAVDYLTWTFMYRRLTQ
NPNYYNLQGVSQRHLSDHLSELVENTLSDLETSKCVAIEDDLYLSPLNLGMIASYYYISY
TTIERFSSSLTVKTKLKGLLEILASASEYEELPIRPGEEELIRRLINHQRFSFDNPKCTD
PHVKANALLQAHFSRQHVGGNLAADQKEVLLSASRLLQAMVDVISSNGWLSLALLAMEVS
QMVTQGMWERDSMLLQIPYFTKELAKRCQENPGGSIETVFDLVEMDDDQRQKLLDMSDAQ
LIEIAKFCNRFPNIDLTYDILDKEDIRAGEEISLQVTLERDLEGRSEVGHVDAPRYPKAK
EEGWWLVVGDTKSNQLLAIKRVPLQRKSKVKLDFVAPAETGSKSYTLYFMCDSYMGCDQE
YIFSIDVKDAGDPEDNMRE
NT seq
6540 nt
NT seq
+upstream
nt +downstream
nt
atggcgaatttggggggtggtgcggaagcgcacgctcggtttaagcagtatgagtatagg
gctaattcgagtttggtgttgacgacggactcgaggcctagggatactcatgagcctact
ggggaacctgagtcattatatgggaagattgatcctaagagctttggggatcgggcgttt
agggggaaacctgctgagcttgaggagaagatgaagaaagctaagaagaagaaagagagg
gagccgttggatgcagaggctgtgcctaggcagagtaagaggaggaggctgcaggaggag
agtgttttgacgacgacggatgaaggggtttatcagccaaaaacaaaggagactagggcg
gcttatgaggctatgctcagtgttattcaacagcagttaggtgggcagcctttgaatatt
gtgagtggggcggcggatgagattttggctgttttgaagaatgacacgtttaagaatgtg
gataaaaagaaggagattgagaagttgttgaatgagataccgaatgctatgtttgatcag
ctggtgtcaattgggaggcttattacggattatcaagatgggggtggtgatgctgctggg
actggtggtgctgcagacggggatgatgctcttgatgatgatgtgggtgtagcggttgag
tttgaggagaatgaagaggaggaggaagagagtgatcttgatatggtacaggatgatgaa
gatgatgaggatgatttagcagatgggcatggatcaggagctatgcagatgggtggtggg
attgatgatgatgaagggatggaagcaaatgagggaatgacgttgaatgttcaggacatt
gatgcttattggcttcagaggaagatttctcaggcttatgagcagcagattgatccacag
cagagccaaaagcttgcagaagaggtattgaagatcctagctgaaggtgatgatagagaa
gttgaaaccaagttattggtgcatcttcagtttgataagtttaatctcatcaagtatttg
ttgaagaatcggatgaaaatagtgtggtgtacccgtctggcgagggcagaagaccaagag
gaaaggaaaaaaattgaagaggaaatgacgcagttgggcccagacttggctgctattctg
gagcagctgcatgctaccagggcaactgcaaaagagagacaaaagaacttggagaaaagc
atcagggaagaagctcgcaggttgaaggatgagagtggaggtgatgtggaccggggtcga
aggggtatatcagatagagatgcagatggtgggtggttgaacggtcagcgtcagttactt
gatctggaaagccttgcatttaaccaaggtggtcttctgatggccaataaaaagtgcgag
cttcctctgggttcttataggaaccacaataagggatatgaagaggttcatgtaccagct
ttgaaaccaaaaccgcttgctgagggtgaaaagctgattaagatatctgaaatgccagac
tgggctcgaccagcttttgaaggaatgtcccagttgaatagggttcagagcaaagtttat
gacacagctctgttctctgctgaaaatcttttgctctgtgctcctacaggagctggtaag
acaaatgttgcaatgcttacaatacttcagcaaattgcattgaataggaatgcagatggt
tcattcaatcacagcaactacaagattgtttatgtggctccaatgaaagcactggtggca
gaagttgttgggaatctgtctaaccgtttgaagcagtatgatgttaatgtgaaggagctg
agtggagatcagacattgactcgccagcaaattgaagaaactcagataattgtcacgacg
ccagaaaagtgggatatcgtaaccagaaaatcaggtgatcgcacttacacacagcttgtg
aaacttctaataattgatgagatccatcttttacatgacaacagaggacctgtattggag
agcatagttgcaaggactgttaggcagattgagacaacaaaagagcatattcggcttgtt
gggttatctgctacactccccaattatgaggacgtggctctgttccttcgagttgattta
aagagaggtctctttcattttgacaatagttatcgaccttgccctttagctcaacagtat
attggtatcacagtaaagaaaccattgcagaggtttcagttgatgaatgatgtatgttat
gagaaggtaattggtgtagctggtaagcatcaggtcctcatttttgtgcactcgaggaaa
gaaactgcaaaaactgctcgcgccatacgagattcagcactaaccaatgacactgttagc
agatttttgaaagaggaaagtgccactcgtgaaattctacgcgagcatactgagcttgtt
aagagcagtgatctcaaggatctttttccatatggatttgctatccatcatgcaggtatg
aacaggggtgaccggcagcttgttgaggagctgttcgctgatggtcatgtacaagtactg
gtttctacagcaactcttgcttggggtgttaatttacctgcccatactgtcatcattaaa
ggaacccaggtatacaatcctgaaaaaggagcatggactgaactaagtcctctggatgtc
atgcagatgcttggtcgagcaggtaggcctcaatatgatacttatggagagggaataata
ataactggacatagtgaattgcagtattatctttctttaatgaatcaacagcttcccatt
gagagccagtttgtgtccaaactggctgatcaacttaatgcagagattgtgctcggtact
gtgcagaatgccaaagaagcctgcaactggcttagttatacatacctgtatgttcgcatg
ttacgtaatcctactttgtatggtttggctcctgatgctttgagtaaagacttgttacta
gaagagagaagagctgatctggttcatactgcggcgacaacattagacaaaaacaatctg
atcaagtatgaccggaaaagtggatactttcaggtcactgacttgggccgcattgctagt
tactattacataactcatgggacgatcactacctacaatgagcatttgaaaccgacaatg
ggagatattgagctttgtcggttgttctctctcagtgaagaatttaaatacgtaactgtg
agacaagatgagaagatggagttggcaaaacttttagaccgcgttcccattcccataaag
gaaagccttgaagaacctagtgccaagattaatgttttgttgcaagcttatatttcacag
cttaagcttgaaggattatctttaacgtctgacatggtttatatcactcagagtgctgga
cgtctaatgcgagctctttttgagatcgttttgaaacgtggatgggctcagttgactgag
aaggccttaaacttgtgcaaaacagtgaacaagagaatgtggagtgtacaaacacctctt
cgtcaatttcatggatttccaaatgagattttgatgaaaatggagaaaaaagatctggct
tgggaaagatattatgatctctcctcacatgagctaggagagctcattcgacaaagaaat
atgggaaaaatgctgcacaggtgtattcatcagtttccaaaacttgttctggctgctcat
gttcagcccattactcgcactatattgaaggttgaactcacaatcacccccgacttcctg
tgggaagataagttccatggatatgtagagccattttgggtttttgtggaagataatgat
ggggaacacattcttcatcatgagtatttcttgttgaaaaagcaatacgttgatgaggac
catactttaagttttaccgttccaatctatgaaccattgcctcctcagtacttcatccgt
gtggtgtcagataaatggattgggtcgcagactgtcttgcctgtttcatttaggcacctt
attttaccagagaaataccctccgcccactgagttacttgatttgcagccattaccagta
actgcattgaggaatccgtcttatgaatcactataccaagaatttaagcactttaatcct
gtccagactcaagtgttcacagtcttgtacaacacagatgataatgtattggttgctgca
ccaactgggagtgggaagactatatgtgcggaatttgcaatcatgaggaatcatcaaaaa
ggtcctgataatgttatgagggctgtctacattgctcctgtagaagctcttgcaaaggaa
cgctataatgactggaagaaaaaatttggggaaggtcttggtatgagagtggttgaatta
actggggaaactgctgtggatcttaaactgttggagaaaggtcaggtgatagtcagcacc
cctgataagtgggatgctctatcacgccgctggaagcagcgcaaacaaattcaacaagtc
agtcttttcgttgttgacgaacttcatttgattgggggtcaaggtggacctatcttggaa
gtgatagtctctaggatgagatatatagcaagtcaagttgaaaataagatcagaattgtt
gctctatctacatctctagcaaatgccaaggatctgggtgaatggattggtgcgacctct
catggtcttttcaatttcccgcctggtgtcaggccagtgcccttggaaatacacattcag
ggtgtcgacattgctaattttgaagccagaatgcaagcaatgaccaagccaacatataca
gcaatcgtccaacatgctaaaaatgggaaaccagccatcgtgtatgttcctacgaggaag
catgctcgtctcactgctgtggatttaatgacatactctagtatagagggtggagaaaac
cccatgtttatattacagtctgtaacagaacttgagccttttgttgacagaatcaaagaa
ccaatgttgcgtgagacactgcagtatggtgtgggatatttacatgagggattgagtccc
actgatcaagatatagtaagaaccctatttgaaactggttggatccaagtttgtgtaatg
actagttcaatgtgctggggagtgccattgcgtgcccatctggtaatcattatgggaact
cagtattatgatgggagggaaaatgctcacagtgactatcaagtaactgatattctccag
atgatgggtcaggctagtcgtcctcttgttgataacgctgggaagtgtgttattttctgc
catgcaccacgaaaggaatactacaagaagtttttgtatgaagcattcccggtggaaagc
caccttcaccattttctgcacgataatctaaatgcagaggtggtggttcaagtcattaca
agcaagcaagatgctgtggattacctcacgtggacattcatgtacaggaggcttacccag
aatccaaactactataatcttcagggtgttagtcaaaggcatctctctgatcacctttcg
gagcttgtagagaacacactcagcgatctggaaacaagcaagtgtgttgctatagaggat
gatttgtatctttctcctctaaatcttgggatgatagcatcatattattatattagttac
acgacaattgaacgtttcagctcttctttgactgttaaaacaaagttgaaaggtcttttg
gagattttggcatcagcttctgaatatgaagaacttccgataaggccaggagaggaagag
ctgatacggaggttgataaaccatcagaggttctcctttgataatcctaaatgcacagat
ccacatgtaaaggcaaatgctttgctacaagcccacttttctaggcaacatgttggtggg
aacttggctgccgatcagaaagaggttcttctttctgccagtaggcttcttcaagcgatg
gttgacgtcatctccagcaacggatggcttagcctggctcttcttgccatggaagtgagt
cagatggtgacacaaggcatgtgggagcgtgactcgatgctactacagattccatacttc
actaaggaattggctaaaagatgtcaagagaatcctggaggaagcatagaaacagtgttt
gatttggtggagatggacgatgaccagaggcagaagctgttggacatgagtgatgctcag
ttaattgaaattgcaaagttttgcaatcggttcccaaacattgatttgacatatgatata
ctcgacaaggaagacatcagggctggggaagagatcagtttgcaggtaactctagaacgg
gatcttgagggtaggtctgaagtgggacatgttgatgctcctagatatcccaaagccaag
gaggaaggatggtggctggtggttggtgatacaaaaagtaatcagttgcttgccatcaaa
agggtgcccctgcagaggaagtcaaaggtgaagctagattttgttgctcccgcagaaaca
ggtagcaagagctacaccctttattttatgtgcgactcttacatgggctgtgaccaggag
tatattttcagcattgatgtaaaggatgcaggtgatccagaggataacatgagagaatga
DBGET
integrated database retrieval system
