KEGG   Daucus carota (carrot): 108199478
Entry
108199478         CDS       T05350                                 
Name
(RefSeq) probable splicing factor 3A subunit 1
  KO
K12825  splicing factor 3A subunit 1
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108199478
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dcr03041]
    108199478
Spliceosome [BR:dcr03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    108199478
 Complex B
    108199478
 Complex C
   U2 SnRNP specific factors
    108199478
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin MBDa UN_NPL4 Cytidylate_kin2
Other DBs
NCBI-GeneID: 108199478
NCBI-ProteinID: XP_017222791
UniProt: A0AAF1BBA8
LinkDB
Position
8:complement(30316605..30325790)
AA seq 1129 aa
MLGSTPILPLPAPPIDGNLGPLPPSELQDREILDDIEEEARQASSASVSVATHTKTIGLI
HPPPDIRTIVEKTARSVAKVGKEFEHRIMKNYPNNPKFNFLKSSDPYHAYYQHRLSEFRS
QNSTSQQPIQASDASGLESAKPDPSEPFRKPLEPPAAEQYTVGLPEGITGEELDMIKLTA
QFVARNGKSFHEELSRREGNNPQFNFMKPKHSILFKFFTSLVDAYSKVLMPPKGLTDKLQ
SSVDSMTTILERCLHRLEWERSQEQARQNYIMDEVRQERKQMARKPRIIDWHNFVVVERI
DFANNEDDDLPAPMTLEEVTRRSKMSTLEEEGLIAEPGKEVEMEMDEEEVQLFEQGMRVA
SLEENGCGKQSEATITPMRIVKNWKRPEERNPAERDSTKYVVSPITGELILINEMSEHMR
ISLIDPKYKEQKERMFAKIRDSTTLAQDDDISKNIMGLARTRPDLFGTTEEEVSNAVKAE
IEKKKYEQPKQVIWDGHTGSIGRTLMYTPLTAPRPYAPHVMPQHGMHMVHPPMPLGIPPP
PPPEEAPPLPEEPEPKRQRLGDSMLIPEDQFLAQHQGPASIHVSVPNVDEGNLKGQVLEI
RVQSLSETVSRLKEEIAGEIQLPSNKQKLSGKAGFLKDHLSLAYYNVSGGETLSLSLRER
GGGICGWRRSREAVAEIVAFYYSIILNSYFGSTNILATYIVKNRSMKTLVMNLEAPRPTR
AAFCRRATGCSQEQARQKNIMDEVRKERKQRARIIDWHDFVVVEMIDFANNEDDDLPAPM
ALEEVIRRSKMLTLEEEEIVEPGKEVGMEMDEEEVQLFEQGMRVASLEENGGGKQSEATI
TPMRIVKNWKRPEERNPAERDPTKYVVSPITGELILINEMSEHMRISLIDPKYKEQKERM
FAKIRDTPLAQNDDISKNIMGLARTRPDLFGTTEEEVSNAVKAEIEKKKYEQPKQVIWDG
HTGSIGRTPMYTPLTAPRPYAPHVMPQHGMHMVHPPMPLGIPPPPPPEEAPPLPEEPEPK
RQRLGDSMLIPEDQFLAQHQGPASIHVSVPNVDEGNLKGQVLKIRVESLSETVSRLKEKI
AGEIQLPSNKQKLSGKAGFLKDHLSLAYYNVSGGETLSLSLRERGGRKR
NT seq 3390 nt   +upstreamnt  +downstreamnt
atgttaggctccacgccgatactgccccttccggctccaccgattgatgggaatcttggt
cctctccctccatctgaattgcaagatagggagattcttgatgatattgaggaggaagca
aggcaggctagctcggcttctgtatctgttgccactcacacaaaaactattggacttatt
catccacctccggatattcgaaccattgttgagaaaacagctaggtctgtggctaaggtt
gggaaagaattcgaacataggattatgaaaaattatcccaacaatccaaaattcaatttc
ttaaaatcttcagacccgtatcatgcctattatcagcatcgtttatctgaatttcgtagt
cagaattctacctcgcagcagccaattcaagcttcagatgcatctggtcttgagtcagca
aagcctgatccctcggaaccgtttcgtaaaccccttgaacccccagcagcagagcagtac
actgttggtcttcctgaaggaattactggggaggagttggatatgattaagctcacagca
cagtttgtagcgcggaatgggaaatcatttcatgaagaactctcaaggagggaggggaat
aacccccagttcaacttcatgaagcccaaacatagcatcctgtttaagttttttacttct
ctagtagatgcctattcaaaagtgttaatgcctccgaagggtttgactgataaactgcag
agcagtgttgacagcatgacgaccatccttgaacgttgccttcacaggttggagtgggag
cgttctcaagagcaggcaaggcaaaattatatcatggatgaggtgcggcaagaaaggaaa
cagatggctaggaagcctaggattattgattggcataatttcgttgttgtcgagaggata
gactttgccaataacgaggatgatgatttaccagctccgatgacacttgaggaagtcaca
aggagaagcaagatgtcgactttggaggaggaaggattaattgctgagcctggaaaggaa
gtagaaatggagatggatgaagaagaggttcagcttttcgaacaaggcatgagggttgct
agtcttgaagaaaatggctgcggtaagcaaagtgaagccacaataaccccaatgagaatt
gtgaagaactggaagaggcctgaggagagaaatcctgctgagagagattcaactaaatac
gttgtttccccaatcactggtgagctaattctgatcaatgagatgtctgaacacatgaga
atctctctcattgatcccaagtacaaggagcagaaagagagaatgtttgctaagattcgg
gatagtaccactcttgcccaggatgatgacatatccaaaaacattatgggacttgcacgg
acccgtcctgatctatttggtacgaccgaggaggaggtttctaacgcagtcaaggcagag
attgaaaagaaaaaatatgagcaaccaaagcaggtcatatgggatggtcatacagggagt
attggacgtactctcatgtatacacctctaacagctcctcgaccttatgcaccccatgtc
atgccccagcatgggatgcatatggttcacccacctatgcctcttggaattcccccaccg
cctccacccgaggaagctcctccacttccggaggagcctgagccaaagaggcaaagactc
ggtgattctatgctcattcctgaagatcagttcctggctcaacaccagggaccggcaagt
attcatgtgtctgtgccaaatgttgatgaaggaaacctgaaagggcaggtactggagatt
agagtacaatctttatctgagacggttagccgtttgaaagaggaaattgcgggagagatt
cagcttccttcaaacaaacagaaactgagtggaaaggctggttttcttaaggatcatctt
tcccttgcttattacaatgtctcaggaggagaaacactttccctttcgttgagagagcgt
ggtggaggaatatgtggctggagacgaagtcgagaagctgttgctgagattgtggcattt
tattactctattatcttgaattcttattttggaagtacaaatattctagctacatatatt
gtcaagaacaggtctatgaaaacccttgtgatgaacctagaggctccacgtccaacacgc
gcagccttttgcagaagggcaactggttgttctcaagagcaggcaaggcaaaaaaatatc
atggatgaggtgcggaaagaaaggaaacagagggctaggattattgattggcatgatttt
gttgttgtcgagatgatagactttgcgaataacgaggatgatgatttaccagctccaatg
gcacttgaggaagtcataaggagaagcaagatgttaactttggaggaggaagaaattgtt
gagcctggaaaggaagtaggaatggagatggatgaagaagaggttcagcttttcgaacaa
ggcatgagggttgctagtcttgaagaaaatggtggcggtaagcaaagtgaagccacaata
accccaatgagaattgtgaagaactggaagaggcctgaggagagaaatcctgctgagaga
gatccaactaaatacgttgtttccccaatcactggtgagctaattctgatcaatgagatg
tctgaacacatgagaatctctctcattgatcccaagtacaaggagcagaaagagagaatg
tttgctaagattcgggatacccctcttgcccagaatgatgacatatccaaaaacattatg
ggacttgcacggacccgtcctgatctatttggtacgactgaggaggaggtttctaacgca
gtcaaggcagagattgaaaagaaaaaatatgagcaaccaaagcaggtcatatgggatggt
catacagggagtattggacgtactcccatgtatacacctctaacagctcctcgaccttat
gcaccccatgtcatgccccagcatgggatgcatatggttcacccacctatgcctcttgga
attcccccaccgcctccacccgaggaagctcctccacttccggaggagcctgagccaaag
aggcaaagactcggtgattctatgctcattcctgaagatcagttcctggctcaacaccag
ggaccggcaagtattcatgtgtctgtgccaaatgttgatgaaggaaacctgaaagggcag
gtactgaagattagagtagaatctttatctgagacggttagccgtttgaaagagaaaatt
gcgggagagattcagcttccttcaaacaaacagaaactgagtggaaaggctggctttctt
aaggatcatctttcccttgcttattacaatgtctcaggaggagaaacactttccctttcg
ttgagagagcgtggtggtagaaaaagataa

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