Daucus carota (carrot): 108199496
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Entry
108199496 CDS
T05350
Name
(RefSeq) serine/threonine-protein kinase VPS15 isoform X1
KO
K08333
phosphoinositide-3-kinase, regulatory subunit 4 [EC:
2.7.11.1
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04136
Autophagy - other
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09140 Cellular Processes
09141 Transport and catabolism
04136 Autophagy - other
108199496
09180 Brite Hierarchies
09181 Protein families: metabolism
01001 Protein kinases [BR:
dcr01001
]
108199496
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dcr04131
]
108199496
Enzymes [BR:
dcr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.11 Protein-serine/threonine kinases
2.7.11.1 non-specific serine/threonine protein kinase
108199496
Protein kinases [BR:
dcr01001
]
Serine/threonine kinases: Other
VPS15 family
108199496
Membrane trafficking [BR:
dcr04131
]
Endocytosis
Rab GTPases and associated proteins
Rab associated proteins
108199496
Autophagy
Autophagosome formation proteins
PI3K complex
108199496
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
VPS15-like_hel
Pkinase
WD40
WD40_Prp19
WDR55
WD40_WDHD1_1st
WD40_CDC20-Fz
EIF3I
HEAT
Beta-prop_TEP1_2nd
PK_Tyr_Ser-Thr
Beta-prop_EML_2
Beta-prop_TEP1_C
NBCH_WD40
Beta-prop_HPS5
WDR90_beta-prop_4th
Beta-prop_CAF1B_HIR1
Beta-prop_WDR90_POC16_2nd
HEAT_EZ
APH
PEP5_VPS11_N
TCAD9
Cohesin_HEAT
Beta-prop_Vps41
Motif
Other DBs
NCBI-GeneID:
108199496
NCBI-ProteinID:
XP_017222808
UniProt:
A0A175YK28
LinkDB
All DBs
Position
8:complement(3459547..3469663)
Genome browser
AA seq
1549 aa
AA seq
DB search
MGNKIARTTQASATEYYLHDLPSSYNLVLKEVLGRGRFLKSILCKHDEGLVLVKVYFKRG
DSIDLREYERHLSRIREVFNGLDQPHVWPFQFWLETDKAAYLLRQYFFNNLHDRLSTRPF
LSLVEKKWLAYQLLYAVKQSHENGICHGDIKCENVLVTSWNWLYLADFASFKPTYIPHDD
PSDFSFFFDTGGRRRCYLAPERFYEHGGEMQVAHDAPLRPSMDIFAAGCVIAELFLEGQP
LFELSQLLAYRRGQYDPSQHLEKIPDSGLRKMILHMIQLDPDSRCSAESYLQSYAGVVFP
RYFSPFLHKFYSLLNPYNSDSRVLICQLSFHEILKQMMGNKAGEETGIDLALASNPLNVE
SSNNIEAKHIVDSTISSRKTELEKGSIHGRFELPGDITTLLRDVKQTGSSSGANTVQEDF
SNSTSFQKQEKCSMPVPDNLLQNISNVFKRNHHPFLRKITMNDMNSLLSDYDNQSDTFGM
PFLPLPQDSMSCEGMVLIASLLCSCIRNVKLPHMRRGAILLLKSCSLYIDDEDRLQRVLP
YVIAMLSDPAAIVRSAALETVCDILPLIRDFPPSDAKIFPEYILPMLSMLPDDPEESVRI
CYSSNISKLALTAYGFLIHSISLSEAGVLNESALGSKSQMRSSDTSGRLQSKNRDTQLAH
LRKSIAEVIQELVMGPKQTPNIRRALLQDIGNLCWFFGQRQSNDVLLPILPAFLNDRDEL
LRSVFYGQIIYVCFFVGQRSVEEYLLPYIEQALGDATEAVIVNALDCLAILCKSKFLRKR
ILLEMIEHAFPLLCYPSQWVRRSAVAFIAASSDYLGAVDSYVFLVPVIRPFLRRQPASLV
SEKAFLSCLNPPVSRQVFYQLLEKSRSSDMLERQRKIWYSSSAQSKEWDTLDLFHSGTRE
LDSMKYWSDKQHDGQGSKSVGNAVQNLDHSEESSKSRLRPIGSFIHNTSGTVDTRDPLFS
EKLQFSGFMSPQMNEANSLSFDKPSEGIPLYYFKYDSNRATGNAPASDSPSPLSSLGFGS
SSVPWMDVGNKSFTLGSSFPPPKLVSGSISIGNSSPQLHRVVHEVEDRETDQAAYVSKFQ
DMRVSGPKGGSTVANDISAAAEVTGVPPFARTPATQDAGWRPRGVLVAHLQEHRSAVNDI
AISTDQNFFVSASDDSTVKVWDSRKLEKDISFRSRLTYSLDGSRAVCTAMLQGSAQVIVG
ASDGIIHMFSVDHISRGLGNVVEKYSGIVDVKKKRVGEGAITSLVNYSADESASKMILYS
TQNCGIHLWDTRTNKDMWTYKVFPKEGYVSSLITSPCGNWFVSGSSRGVLTLWDLRFCIP
VNSWQFSTACPVENMCLFVPSVNSSISTIARPLVYVAAGCNEVSLWNAENGSCHQILRVA
SNDHDSETSDLPWALTRPSSKSNSKADLRRNVNPKYKVDELNEPPPRLPGIRALLPLPGG
DLLTGGTDLKIRRWEHYSPDRSYCICGPTIKGVANDDFYETKSSFGVQVVQEAKRRPLAT
RLTGKAILAAAATDSAGCHRDSILSLATVKLNQRLLISSGRDGAIKVWK
NT seq
4650 nt
NT seq
+upstream
nt +downstream
nt
atggggaacaagatcgcacgcacaacacaagcatcggcaacagagtactatctccacgac
ttgccttcttcgtacaatttagtgctcaaagaagtgctcggccgcggccgattcctgaaa
tcgatattgtgtaaacacgacgaaggtctcgtgttagttaaagtctatttcaagcgcggt
gattctattgatcttcgcgaatacgagcgtcatctgtctcgtattcgcgaagtgtttaac
ggtcttgatcagcctcatgtttggccttttcagttttggcttgaaacggataaagctgct
tatctgttgagacaatacttctttaataaccttcatgatcgtctgagcacaagacctttc
ttgagtctagttgagaaaaagtggctggcttatcagttgctctatgcagtgaagcagagc
cacgagaatggaatttgtcatggggatattaagtgtgagaatgtgttggtcacttcttgg
aattggctttaccttgccgactttgcatctttcaaacctacatatattccacatgatgac
ccgtcagatttttctttcttctttgacactggaggaagaaggcgttgttatctagcacca
gagagattttatgagcatggaggtgagatgcaagttgcacatgatgcacctttgaggcca
tccatggacatctttgctgcaggttgtgttattgctgagcttttccttgagggacagcca
ctgtttgaactctcccaactacttgcttatcgcagagggcaatatgatccaagccaacat
ctggagaagatcccagattcaggattacgcaagatgattcttcacatgattcagttggat
ccagactctcgatgttcagctgagagctacttgcagagctatgctggtgttgtcttcccg
cgctacttttcaccttttttacacaagttctattcgctgctgaatccatacaattctgat
tctagggttctaatatgccagctctcctttcatgagatactcaagcaaatgatgggcaat
aaagcaggcgaggagactggtattgatctcgcattagcctcaaacccattaaatgtcgaa
tcctctaataatatagaggcaaaacatattgtggactcgacgatctcctccaggaaaaca
gaactggaaaaggggtcgattcatggtcgatttgagcttcctggagatatcactacactt
cttagggatgtaaaacaaactggcagttcttctggtgcaaatacggtgcaggaggatttt
tctaattcaacaagttttcagaagcaagaaaagtgtagcatgccagttcctgataatctc
ctacaaaatatatcaaacgtttttaaaagaaatcaccatcctttccttagaaagatcacg
atgaatgacatgaactctcttttgtctgactatgataaccagtcagatacctttggaatg
cctttcttaccattacctcaagatagcatgagttgtgaaggtatggttttaattgcttca
ctgctctgttcctgtattcgcaatgtcaagttgcctcatatgaggaggggtgctatactc
ttactgaagtcatgctctttatatatcgacgacgaagataggttacaacgcgttcttccg
tatgtaattgcaatgctttctgatccagctgcaatcgtacgttctgctgccttggagact
gtttgtgacattcttcctttaatacgagatttcccccccagtgatgctaaaatctttcca
gagtatattctgccaatgctttccatgcttcctgatgatccagaggaaagtgtacggata
tgttactctagtaatatatccaagctggcactaacagcttatgggtttttaattcactca
ataagcttaagtgaggcaggggtccttaatgagtcagctttgggctccaagtcacaaatg
cggtcttctgatacatctggaagattgcagagtaaaaatagagatacgcagcttgcacat
ttgagaaaatccatagccgaggtcattcaagaactagtaatgggtccaaagcaaacccca
aatatcaggagagcgctcttgcaggatataggcaacctttgctggttctttggacagaga
cagagtaatgacgttttgttacctatcctcccggcttttttaaatgatcgagatgagctg
cttagatcggtattctatggacagatcatttacgtctgcttctttgtagggcaaagaagt
gttgaggaatatctgttgccgtacattgagcaggccttaggtgatgcaactgaggctgtt
atcgtcaatgctttggattgcttggcaatcttatgtaaaagcaaatttctgcggaaaagg
atactccttgagatgatagaacatgcttttccattgttgtgttatcctagtcaatgggtg
aggaggtctgcagtagctttcattgctgctagtagtgattacttgggtgctgtcgattcc
tatgttttcctggtcccagtaatacgcccttttcttcgaagacaaccagcatctttagtt
tcagagaaggcttttctttcatgtcttaaccctcctgtctcgagacaagtattttaccaa
ctcttagaaaaatcaaggagttctgacatgttagagaggcagagaaagatatggtatagt
tcatctgcacaatctaaagaatgggatactcttgatttgtttcatagcggaacaagagaa
ttagattcaatgaagtactggtcagacaagcaacatgatggtcagggttctaaatccgtt
ggcaatgctgtacaaaacttggatcatagtgaagaaagtagtaaatctaggttgagacct
attggaagttttattcacaatacatctggcaccgttgatacgcgggatcccttattttca
gaaaaattacagttttctggtttcatgtctccacaaatgaatgaagctaacagccttagt
ttcgataaaccatcagaaggcatacctttgtactattttaaatatgacagtaatcgagca
actggaaatgctccagcctctgattctccttcaccattgagttccttgggttttggttca
tcatcagtgccctggatggacgtaggaaataagtcttttactttgggtagctcatttcca
cctcctaagcttgtttcaggttcaattagtataggtaatagttctccacaacttcacaga
gtggtgcatgaggtagaagacagggaaacagatcaagcagcctatgttagtaaatttcaa
gatatgcgggtgtctggtcctaaaggaggttctactgttgccaatgatatctcagctgca
gctgaggtgacaggagtacctccctttgcaagaacaccagcaactcaagatgcagggtgg
aggccccgtggtgtgttggttgcccacctacaggaacaccgttcggccgtcaatgacatt
gccatctcaaccgaccagaacttctttgtgagtgcgtcggatgattccactgtgaaggtg
tgggattctagaaagttggagaaagacatctcattcaggtcgaggcttacttattctcta
gatggaagccgtgcagtatgtaccgcaatgctccaaggttcagctcaagtcattgttgga
gcttctgatggcataattcacatgttctctgttgatcacatttccagggggcttggaaat
gtggttgagaagtattcaggcattgttgatgttaaaaagaagagggttggagaaggtgcc
ataactagcctagttaactactctgcagatgagagtgcttctaaaatgattctttatagt
actcaaaattgtgggatccatctctgggacactaggacaaataaggacatgtggacttat
aaagtttttcctaaagaaggctacgtgtcatctttaataacatccccttgcgggaattgg
tttgtttccgggtcttccaggggcgtgcttactctttgggatcttcggttttgtatacct
gttaactcatggcagttttctacagcttgccctgtagagaacatgtgtctctttgtgcct
tctgtaaattcttcaatatccactatagccaggccccttgtatatgttgcagcaggttgt
aatgaagtttctctctggaatgcagaaaatgggagctgtcatcagatcttgagggtggct
agtaacgaccatgatagcgaaacttctgatttaccttgggccttgactagaccttccagt
aagtcaaactctaaagcagatttgagaaggaatgttaatcccaagtataaagtagatgag
ctgaatgaaccacctcctcggttgcctggtatccgcgcattactcccattaccaggtggg
gacttgttaacagggggtacagatttgaagatccgcagatgggaacattacagccctgat
cgaagttattgcatttgtggaccaactataaagggagttgctaatgatgatttttacgaa
acaaaatctagtttcggggtgcaagttgtccaggaggcgaagagacggcctttagctact
aggttgactgggaaggcaatccttgcagctgctgctactgattccgctggttgtcaccgt
gactctatactttctctggctacagtcaaattgaaccagagacttctgatatcaagcggc
agagatggagccattaaggtttggaagtaa
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integrated database retrieval system
