Daucus carota (carrot): 108199535
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Entry
108199535 CDS
T05350
Name
(RefSeq) paired amphipathic helix protein Sin3-like 4
KO
K11644
paired amphipathic helix protein Sin3a
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dcr03036
]
108199535
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
108199535
REST complex
108199535
Heterochromatin formation proteins
Other heterochromatin formation proteins
108199535
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sin3a_C
Sin3_corepress
PAH
PAH_ZNF598
Motif
Other DBs
NCBI-GeneID:
108199535
NCBI-ProteinID:
XP_017222871
LinkDB
All DBs
Position
8:32045173..32054251
Genome browser
AA seq
1172 aa
AA seq
DB search
MTSKGSNMKLTPNVAFSFLNQVKKRFKDEEGKYEDFVKIMKSFMIERINIADVIARVKEL
FQGDRELILGFNAFLPKDYVITLPSELPSEDEPDPPRKRVRFVDAIDFVEKIKERFEGKE
NVYKTFLYILDMYGKQTKTLAEVNQEVVDLFGDQVDLIEEFGRFLPGPSGQPLNNSPHSK
RSPIPYHNYQSSSASAMRIGRAEKAAASFDVRHFNVDEPDPKHDRFATGINKDFHKKSSK
EMERRDSSKCRKRRVDDRDYDNGAPHHASPICKTAANGEQSERFYKGGSWSNEHVPISVK
VYSRDRDQKGEKHYKDKNHEDREIERSHRIASRGKDESVCNISQLPNKDELLVKPINELD
LSTCERCTPSYRLLPKNYPIPSVSWRTDADAKVLNDYWVSVTSGSEDYSFKHMRKNQYEE
SLFRCEDDKFELDMLLESVKATTRSLENLLEKINDNTINESSIHIEDHLTALNLRCIERV
YGDHGLDVMDILRNNPPLALDVILHRLKQKEEEWTRCRSDYSKVWAEIYAKNHHRSLDHR
SFYFKQEESKRLSSKALLAEIKEMSKNQQEEDDVLASIATGSRQPVIPNLKFQLPNSDIH
FYVYWLISKSCQYMYPAERSDQVLKVYTTLLAPMLGVSSQLQHAENTEGDFVKAVVVANG
VAPCTGETDGSPIGVTGNNGGVGKDKFHDPDHISVNGDSKYEKPHLEKVKNNITPMDEMP
RIRKTEQPDCSSISTAEVEGNYERIHEENTPGILTTLESKKAAASGRLLENLPSSAEGDS
KPISDLIGAMTESINGEQCKEESRVQSTTVKVENELSPSGEYEDHNLQGHGEANHIPEDS
ATSMQYQTRDSEEDEVENDATMDDDKGDIRLNSVKPLKVHVPSLLLDKQKENTQIFYGND
SFYILFRLYETLYDRIKAVKSSAEKNCKTSNDATPSDPCVSLMDEFFKLLDGSSDNTEFE
DHCRTLMGAESYVLFTLDKLVKKLVNQLETIAMNDLDDKLIQLYAYEKLRRGISSDKLYH
DNARALLRDEYMYRIECSSKPLQLSVQLMDYGYDKLEPGAVFMDSILQSYMEDNPEEKSG
SGVILRRNKRKFASGNGLSHTDQAIEGLQIYNGLECRINISSAKVSYVLGTEDYLCRKRK
KVSHCNGHTNRSHVSFTRAQGLDRLLKPCTEE
NT seq
3519 nt
NT seq
+upstream
nt +downstream
nt
atgaccagtaaggggagcaacatgaaactaacaccaaacgttgccttttcttttctgaat
caagtgaagaagagattcaaagacgaagaagggaaatatgaagacttcgttaaaatcatg
aaaagctttatgattgaaagaattaatattgccgatgtcatagcaagagtaaaggaattg
tttcaaggggacagagaactgattctgggattcaatgcctttttaccaaaggattatgta
atcacccttcccagtgagctgcccagtgaggatgaaccagaccctccaagaaaacgagtt
agattcgtcgatgcaattgactttgtagaaaaaattaaggagaggtttgaaggtaaagag
aatgtgtacaagacttttctctacatattggacatgtacgggaagcaaaccaaaaccctc
gcagaagtcaaccaggaggtggttgatctttttggtgaccaagtagacctcatagaagag
tttggccgcttcttacctggtccctcgggacagcccttgaataattctcctcactccaaa
aggagtcctatcccttatcataattatcagagctcatctgcgtccgcgatgaggattgga
cgtgcagagaaggccgcagcttcattcgatgttcggcactttaatgttgatgaacctgac
ccaaaacatgatagatttgcgacgggaattaataaagacttccataagaaaagtagcaag
gaaatggagagaagggacagtagcaagtgtaggaaaagaagagtggatgatagggattat
gataatggtgctccgcatcatgcatcacccatttgtaaaactgctgcgaatggtgaacag
tctgaacgattttacaaaggaggttcctggagcaacgaacatgtacctatatctgttaaa
gtatatagtagagatagagatcaaaaaggtgaaaagcattacaaggataaaaatcatgaa
gacagagaaatagagagatcgcatagaatagcttcgagaggtaaagatgaatcagtatgc
aacatatcacagcttccaaacaaggatgaattattggttaaaccaatcaatgaacttgac
ctgtctacttgtgagcgctgcacacccagttaccggcttctgcctaaaaattatccaatt
ccatcagtgagctggagaacagatgctgatgctaaagtattgaatgattattgggtatca
gttacttcaggaagtgaggactactcttttaagcatatgcgcaagaaccaatacgaagaa
agcttatttcgctgtgaagatgataagtttgaattggatatgctgctagaatctgtaaaa
gcgacaacaagaagtttagaaaacttgttagagaagatcaatgataatacaattaatgaa
agttcaattcatattgaagaccatttaacagctttaaatttaaggtgcattgaacgtgta
tatggtgaccatgggcttgacgtgatggacattttaagaaacaatccaccacttgcactt
gacgttatattacatcgcttaaagcagaaagaggaagagtggacaagatgtcgttctgat
tatagtaaagtttgggctgaaatatatgcaaagaaccaccatagatcacttgatcaccga
agcttctatttcaagcaggaggagtcgaagaggttgagtagtaaagcattgttggccgaa
attaaggaaatgagtaaaaaccagcaagaagaagatgatgtattggcatctattgctact
ggatctagacaaccagttataccgaatttgaaatttcaactccccaattctgacattcat
ttctatgtgtattggctcattagtaaatcctgtcaatatatgtatccagctgaacgatct
gatcaagttttgaaggtctatacaactttgctagcaccaatgcttggtgtttcatctcag
ttgcaacatgccgagaacactgaaggggactttgttaaggctgttgttgttgctaacggt
gttgctccttgtaccggagaaactgatggcagtcctattggtgttactggtaacaatggc
ggagttggtaaagataagttccatgatccagatcatatttctgtcaacggagactcaaaa
tatgagaaacctcaccttgagaaagtaaaaaataatatcactcccatggatgaaatgcct
agaattagaaaaactgaacaaccagattgctctagtatttcaactgccgaagtggagggc
aattatgaaagaatccatgaagaaaatacaccagggatcttaactaccttggaatctaaa
aaagctgctgctagtgggcggcttttagaaaatttgccttcgtcagctgagggtgattcc
aaaccaatttctgatttgattggagcaatgacagagagcatcaatggtgagcaatgtaaa
gaagaatctcgagttcaatctacaactgtgaaagtggagaatgaactatctccaagcgga
gaatatgaagaccacaatttgcaaggacatggagaggctaatcacatacctgaagacagt
gctacaagcatgcaataccaaaccagagatagtgaagaagatgaagttgaaaatgatgct
acgatggatgatgacaaaggtgacattcgattgaattcagtgaagcctcttaaagtgcat
gtaccttcactgttacttgacaagcaaaaggaaaatacccagatcttttatgggaatgat
tctttctatattctttttcggctctatgaaacactatatgatagaataaaggctgtgaag
tcctcggctgaaaaaaattgtaagacttctaatgatgcaaccccaagcgacccatgtgtc
agtttaatggacgagttctttaagttattggatggatcctctgataatacagaatttgag
gatcactgtcgaactttgatgggtgctgaatcgtatgttctattcacattagacaagctg
gttaaaaaacttgtcaaccagctagaaacaattgcaatgaatgatctggatgataaactt
atccaactttatgcttacgaaaaattaagacgtgggatctccagtgataaactttatcat
gataatgcccgtgccctccttcgagacgagtacatgtaccgtattgaatgttcatctaaa
ccactacaattgtctgtgcaacttatggactatggttatgacaagcttgaaccaggtgct
gttttcatggactccattcttcaatcttatatggaggacaatcctgaagaaaagagcgga
tcaggggttatcttgaggagaaacaagcgcaaatttgcatctggcaatggactttctcat
acagaccaggccatagaaggacttcaaatttataatggtttggaatgcaggattaacatc
tcttctgccaaggttagttatgttttaggcaccgaagattatttgtgccggaaaaggaag
aaagtttcgcattgcaacggccacacaaatcgttctcatgtttcttttacaagggcacaa
ggacttgacagactgctgaagccctgtacagaagagtga
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