Daucus carota (carrot): 108199549
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Entry
108199549 CDS
T05350
Name
(RefSeq) pre-mRNA-processing protein 40A
KO
K12821
pre-mRNA-processing factor 40
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108199549
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108199549
Spliceosome [BR:
dcr03041
]
Complex A
U1 snRNP components
U1 related factors
108199549
Complex B
108199549
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
FF
WW
WW_TCERG1
SMODS
FF_RHG35_4th
WW_2
Motif
Other DBs
NCBI-GeneID:
108199549
NCBI-ProteinID:
XP_017222902
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All DBs
Position
9:complement(23181699..23193445)
Genome browser
AA seq
990 aa
AA seq
DB search
MANNSQFNGMQSLRPHTAPPQGPPQINHPPMPMQFRPTVPPQQPAPYIPVPSQQFLPVGG
TNVGVPSVVQPGQFPQAIMQQSRPGQGGHIMPLPLPLPIPAPDTQPNRPVISVSPQPQQN
GQTPNGYMPGSAGPRMPISSTYSIPSTGQPQMNGQATGQYQPIHQTSMPCYSAGGQPWLA
GSHNTQPVTPMPHSVEQRPHSAEVPATGNHCSTDNTQSDWIEHTRRGRRFYYNKRTRVST
WEKPLELMTETERADASTDWREITSPNGVKYYHNRVTKKSTWTIPDEVKLARDKIAKESM
NGTQEYDPASVSVLEASSPITDSTREAVTSTTPVAPVVAVTSLSACVESATTNAIGVQTP
LHVGPTLDTTLGSSEVPLAVSNIETTSMGNSDAISAGALTTASGISVGAIEELKNGTSTE
SKTSITALEERTVDQEPVVYENKLEGKKAFIALLETSNIESDSTWDQAMKVIINDSRYAA
LKTLVERKQAFNEFLEQKKQQEAEERRAKQKKVVEGFKKMLEESQELTSSTRWSKAITIF
EEDERFKAVERTKDRENLYEDYLVELGNKERAKALEEQKRNRMEYIEYLRSCEFIKASSQ
WRKVQDRLEADERCSRLEKIDRLEIFQEYLRDLEKEEEEQIKLRMEEARKAERRNRDDFR
KLMEDHIAAGVLSVNTHWRDYCMKVKELPAYLAVSSNTSGATPKDLFEDVAEELEKQYLE
DKARIKDAVKLGKVNLTSTWTIENLKDAVAETTGSHVVSDANWKLVYDELQERAREREEK
EAKRRKRLADDFFVFLCSLKEVNASSRWEDCNSAFEDRFKREESFLRETFENYVLELKEK
AREKERKRKEEKDRKDKDIKDREKRKAKERRDKERGKVKDRDKNDGSDSEKADREGSHGL
EENRRSGRDRKHRKRHSNSADDLSFDEKDRDRSKSSYRHSSKKSKQIDQHPAEYDSRHKR
HKREHYSGSHWSGDYNEQREREYGEDGEFW
NT seq
2973 nt
NT seq
+upstream
nt +downstream
nt
atggccaacaattcacagtttaatgggatgcagtctcttcgtccacatactgctcccccc
cagggtccacctcaaattaatcacccgcctatgcctatgcaattccgacctactgttcca
ccgcagcagccagctccatatattccagtgccttcccagcagtttctgcctgtcggggga
acaaatgttggagttccttctgtggtacagccaggccagtttcctcaagctatcatgcag
cagtcaagaccaggacaaggaggacatattatgccactaccgctaccacttccaattcca
gcgcctgatactcaaccaaacaggcctgttatatctgtctcaccacagcctcagcaaaat
ggtcagactcctaatggttacatgcctgggtcagcgggtccgagaatgcctatatcctct
acgtactctataccatccacaggccagccacaaatgaacggacaggccacaggtcagtac
cagccgattcaccagaccagcatgccatgttattcggcaggggggcaaccttggttggca
gggagccacaacacacaacctgtaacacccatgcctcattcggtggaacaacgcccacat
tctgcagaagttcctgcaactggaaatcattgttctactgataatacacaatcagattgg
attgagcatactcgtagaggaagaagattttattacaacaagaggacaagggtgtctact
tgggagaaaccattggaattgatgacagaaactgagagggcagatgcatcaactgactgg
agggagattacgagtcctaatggagtaaagtattatcacaacagggtcactaagaaatca
acttggactatacctgatgaagtcaagttggctcgtgataagatagcaaaggaatctatg
aacggaacacaagaatatgatcctgcttcagtctctgttttagaagcgtcttcccctatt
acagatagcactcgcgaggcagtaacaagcacaactcctgtggcacctgttgttgcagtt
acctcattatctgcatgcgtagaatctgctacaacgaatgctattggagttcagacacca
ttacatgtgggaccaacacttgatactacattaggaagctctgaagttcctcttgccgtt
tccaatatcgaaacgacctcaatgggcaactcagatgcaatttctgctggggcgttaact
actgcaagtggaatttctgtaggggctatagaggaactgaagaatgggacaagcactgag
agtaagactagtattactgcattggaggagagaacagttgatcaggaacctgtagtttat
gaaaataaattggagggaaaaaaagcatttatagcactcttagaaacttcgaatattgag
tcagactcgacttgggaccaggccatgaaggtcattattaatgacagtagatatgctgcg
ttaaaaacacttgtggagcggaagcaagcttttaacgagttcttggagcaaaagaagcag
caagaagcagaagagaggcgtgctaaacagaaaaaagtagtagaaggttttaaaaagatg
ttagaagagtcccaagagctcacatcatcgacaagatggagcaaagcgataactattttt
gaagaagatgaacgttttaaagctgttgaaagaaccaaagaccgtgagaatctttatgag
gattatcttgtggaactgggtaataaggaacgagcaaaggcattggaggaacagaagcgt
aacaggatggaatacattgaatacttgagatcttgtgagtttataaaggcaagcagccag
tggagaaaagtgcaggaccgtctggaggctgatgagaggtgttcacgacttgaaaagatt
gatcgtttagaaatttttcaggaatatttgcgtgatttagagaaggaggaggaggagcag
ataaaattgcggatggaagaagcaagaaaagctgaacgaagaaatcgtgatgattttcgc
aagttaatggaagatcatattgccgcaggagtgcttagtgtaaatacgcactggagagac
tactgcatgaaggttaaagaattacctgcatatctagctgtctcgtcaaacacctctggt
gcaacaccaaaagatctgtttgaagatgttgccgaggaattagaaaaacagtatctcgaa
gacaaggctcgtataaaagatgctgtgaagttagggaaggtaaacctcacatcaacatgg
acgattgagaatttgaaggatgcggttgcagaaacgactggctcacatgtggtgtcagat
gctaactggaagcttgtttatgatgaattacaagaaagagcaagggagagagaggagaaa
gaagctaaacggcgcaaacgtcttgctgatgatttttttgtatttctgtgtagcttaaag
gaagttaatgcatcttctagatgggaagactgcaattcagcatttgaagatcgatttaag
agagaggaaagcttcttacgggaaacctttgagaattacgtattagaacttaaagaaaag
gctagagagaaagagcggaaacggaaggaggaaaaggacagaaaggataaggatataaag
gacagagagaagaggaaggcgaaagagagacgggacaaggagagaggaaaagtgaaagac
agagataagaatgatgggtcagacagtgaaaaagctgacagagaaggttcccatggttta
gaagaaaatagaaggtcaggaagagacagaaaacatagaaagcggcattcaaattctgct
gatgatttgagttttgatgaaaaagatagagatcggtcgaaaagttcttacagacatagc
agcaaaaaatcaaagcagattgaccagcatccagcagaatatgatagccggcataagaga
cacaagagagaacattacagtggttctcattggagtggtgattacaatgaacagagagaa
agggagtatggagaggatggcgaattttggtaa
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