Daucus carota (carrot): 108199653
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Entry
108199653 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108199653 isoform X1
KO
K07456
DNA mismatch repair protein MutS2
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03430 Mismatch repair
108199653
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108199653
DNA repair and recombination proteins [BR:
dcr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
Mismatch and loop recognition factors
108199653
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
MutS_V
MSSS
Smr
OmpH
MutS_III
Motif
Other DBs
NCBI-GeneID:
108199653
NCBI-ProteinID:
XP_017223063
UniProt:
A0A175YMY5
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Position
8:16777887..16783674
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AA seq
900 aa
AA seq
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MELHAPLISTVRSPPFLLHRRFPHRFAISLCSTPRVTLADSLQKETLQTLEWPSICRQLA
AFTSTPMGLHAARNANIPIGRSSGESRKLLDQTAAALAIPVPLDFSGIEDVTGIVDVSVS
GELLSIREICTVRRTLKAARELFEQLQNISSNHERYTPVLEILQKCDFLMELEQKINFCI
DCKFSVILDRASEELEIIRSERKGNMENLESLLKQVSSQIFQAGGIDRPLVTTRRSRMCV
GVRASHRNLLPGGVLLNVSSSGATYFMEPKEAVELNNMEVRLSNHEKAEEKAIFSMLTSQ
IAESKTEIKYLLDRILEIDFAVARASHARWLSAVRPNLVSKPSKCIESGGVDYLSVNIEG
IQHPLLLEASFRASSDFVESNSSHSRNGTMNSELLPGPYDFPVPIDIKIKCGTRVIVISG
PNTGGKTASLKTLGLASIMMKAGMYLPAKKNPSLLWFDLILADIGDHQSLEQSLSTFSGH
LSWLWKILEVVSEDSLILIDEIGSGTDPSEGVALSTSILQYLKDRVSLAVVTTHYADLSL
MKETDSRFENAAMEFSLETLQPTYRVIWGSTGESNALRIAESIGFDAEIISCAHAWVQRL
MPDKMQKRKGLLYQSLMEERSRLEAQAGRAASLYRDVMHLYNEIQEEAVDLAQREELIKA
TETQLIRIEIRSGISQIEDIVNEFEKQLRNARTDEFNSLLKQSESAVASVVEAYRRTKVF
PIGGTPASSYMPQIGEKVNVKGLGYKFATVVEVDEDDGTVLVQCGKMKVRVDISSICLPP
PSVKDATRNSAPHMKKTGQRSRSSRNFPKDNSDEVVSYGPVIQTSKNTVDLRGMRVDEAS
RQLKLAIGATGSNSILFIIHGMGTGVIKECTLEILGKHPRVEKFEQESPMNYGCTVAHIK
NT seq
2703 nt
NT seq
+upstream
nt +downstream
nt
atggagctccacgcccctctcatttccaccgtccgatcacctccctttcttctccaccgt
cgatttcctcaccgcttcgcaatctccctctgctcaactccgcgagtcaccctcgccgac
tcgctccagaaagagaccttacaaaccctagaatggccttcaatttgtcgccagctcgcc
gccttcacttcaactcctatgggcctacacgccgctcggaacgcgaatattccgatcggc
cggagctccggcgagagccggaagttgcttgatcagacggctgcggcgttggcgattccg
gtgccgttggatttttcgggaattgaggacgtgacggggattgttgatgtttctgtgtcc
ggggagttgctttcgattcgagagatttgtacggtgaggaggactttgaaggcggccaga
gagttgtttgaacaattgcagaacatttcgtcgaatcatgaaaggtacacccctgtgctt
gaaatactccaaaagtgcgacttcctcatggaattggagcaaaagataaatttctgcata
gactgtaagttctcggtcattctagatagagcaagtgaagaactagagatcattagatca
gaaagaaagggtaatatggaaaatctagaatctctgctgaagcaagtatcatctcaaatt
tttcaggctggaggtatagacaggccactggtaacgacacgccgttccagaatgtgtgtg
ggcgtcagggcttcccacagaaatttgctgccgggtggtgtacttctcaacgtaagcagc
tctggagctacatactttatggaaccgaaagaggcagttgagttgaacaacatggaagtc
aggctttcaaatcatgaaaaggctgaggaaaaagctattttcagtatgctgacatcacaa
attgcagaatcaaagacagagatcaagtatttgttggatagaattttggaaatcgatttt
gctgtggcaagagcttctcatgctcggtggttaagtgcagtccgtccaaatttagtatca
aagccttcgaaatgtattgaatctggtggagttgactacctttcagtgaacattgaaggt
attcaacaccctttgcttcttgaggcctcttttagagcttcatcagattttgtagaatcc
aattcttcacattctaggaatgggacaatgaactctgaactacttcctggtccttatgat
tttcctgtgcctattgacatcaagattaaatgtggtacaagagtgattgtaatttcaggg
ccaaacactggtggcaaaactgcatcattaaaaactttaggcctggcatctattatgatg
aaagctggcatgtatttacctgctaaaaaaaatccatcactcctgtggtttgatcttatt
cttgctgatatcggagatcaccagtctctggaacaaagtctatcaacatttagcggtcac
ctttcatggctttggaagattttggaagtggtttctgaagattcactgattcttattgat
gaaatcgggagcgggacagatccttcagaaggtgttgctctttctaccagtatactgcaa
tatctgaaggacagagtcagtttagccgtagtgacaacacactatgccgatctgtcactt
atgaaggagactgattcacggttcgagaatgcagcaatggagttttcgttggagactcta
caaccaacatatcgtgtaatttggggaagcacaggtgaatctaatgctctgcgcattgct
gaatcaatcggctttgatgcagagataattagctgtgcacatgcatgggtacagaggttg
atgccagataagatgcagaagcggaaagggttgctttatcagtcactaatggaagagaga
agcagattggaagctcaggcaggaagggctgcatctctttatagagacgtcatgcatcta
tacaatgagattcaagaggaggcagtagatcttgctcaacgcgaggaacttattaaggct
actgagacccaactgatccggatagagattagatctggaatttcccaaatagaagatata
gtaaatgaatttgaaaaacagctcaggaatgctcgtactgatgagtttaactcactgctt
aaacaatcagaatctgcagttgcatctgttgttgaagcttaccgcaggactaaagttttc
cctattggaggaacacctgccagttcatatatgccacagataggagagaaagttaatgtg
aagggattgggatataagtttgccaccgtagttgaagtagatgaagatgatggaacagtc
ctggttcaatgtggtaagatgaaggtccgtgtggatattagcagtatatgcctaccccct
ccaagtgttaaagatgctacaagaaattctgcaccgcacatgaaaaagacgggtcagcga
agcagaagctcaagaaattttccaaaggacaatagtgatgaggtagtttcttatggacca
gtgatacagacatctaaaaatactgttgacttgcggggaatgcgggtggatgaagcatct
cgccaacttaagttggcaattggtgcaacagggtctaattcaattctctttatcatacat
ggtatgggcactggggttatcaaggagtgcacacttgaaatattgggaaaacatccccgc
gttgaaaagtttgaacaggagagtccgatgaattatggttgtactgttgctcacataaaa
tga
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