Daucus carota (carrot): 108199708
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Entry
108199708 CDS
T05350
Name
(RefSeq) replication protein A 70 kDa DNA-binding subunit A
KO
K07466
replication factor A1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03030
DNA replication
dcr03420
Nucleotide excision repair
dcr03430
Mismatch repair
dcr03440
Homologous recombination
dcr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
108199708
03420 Nucleotide excision repair
108199708
03430 Mismatch repair
108199708
03440 Homologous recombination
108199708
03460 Fanconi anemia pathway
108199708
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
dcr03000
]
108199708
03032 DNA replication proteins [BR:
dcr03032
]
108199708
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108199708
Transcription factors [BR:
dcr03000
]
Eukaryotic type
Zinc finger
Cys2His2 others
108199708
DNA replication proteins [BR:
dcr03032
]
Eukaryotic type
DNA Replication Elongation Factors
RPA (replication protein A)
108199708
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
RPA (replication factor A)
108199708
MMR (mismatch excision repair)
108199708
DSBR (double strand breaks repair)
HR (homologous recombination)
108199708
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Rep_fac-A_C
REPA_OB_2
Rep-A_N
tRNA_anti-codon
DUF223
Motif
Other DBs
NCBI-GeneID:
108199708
NCBI-ProteinID:
XP_017223140
UniProt:
A0AAF0XQI8
LinkDB
All DBs
Position
8:9912396..9915798
Genome browser
AA seq
623 aa
AA seq
DB search
MPVHLTANAISAIHAGDLNAKPLVQVLDIKARTIANQERYRLVISDGELTQDAMIATQLN
DRVKTGQIVTGSVVQLIDYVCNSVHSRKIIVILNMETIIPECEIIGNPKLIPEPDAAAQK
AVPNFTSKSTIPSTRNNYCGPSAPNGNTQGYRPTVQPSYQPPPNYRNQGTIMKNEAPARI
IPIAALNPYQGRWAIKARVTAKGDLRRYNNAKGDGKVFSFDLLDSDGGEIRVTCFNAVVD
RFYDTIEAGKVYVISKGSLKPAQKNFNHLKNEWEIFLEATSIVDLCPDEDASIPQQQFSF
RPISEIENAENNSILDVIGVVITVNPSVPILRKNGMETQRRVLKLKDQSGMSVELTLWGE
FCNKEGQKLQEMVDSGFFPVVAVKAGKVNDFSGKSIGTISSSQLFINPDSPEAMNLRQWF
DRGGKDLASQSISKDIVPGVSRNEIRKTLSQIKDEGLGRSDKPDWVTVKAYITFIKTDNF
CYTACPLMIGDRQCNKKVTRSGSRWQCDRCNQEFDECDYRYLLQLQVQDHSGLTWMTAFQ
ESGEEIVGCSAKELYLLKHEQQDDERFAQNLLKGLFTQFLLKLKIKEELYGDEQRLKVTI
VKAEKVNHVAETRYLLDLIPKSR
NT seq
1872 nt
NT seq
+upstream
nt +downstream
nt
atgccggtacatttgacggcgaacgcaatctcggcgattcacgccggagatttgaacgcg
aaacctctcgttcaagtcctagacattaaagccagaaccatcgcgaaccaggaacggtac
cgtttagtgatctccgatggcgagttgactcaggacgcaatgatcgccacgcagctcaat
gaccgagtcaaaaccggacaaatcgttacaggatctgttgttcagttgattgattatgtc
tgtaacagtgttcattctcgcaagattattgttattcttaacatggaaacaattataccc
gagtgtgagataatagggaacccaaagttgattcctgaacctgatgcagcagctcagaaa
gcggtgcctaattttacctctaaaagcacaattccaagtacaagaaataattattgcggt
cctagtgctccaaatggtaatacacagggctaccgtccaactgttcaaccttcataccaa
ccacctccaaattacaggaaccaagggacaattatgaagaatgaagcccctgcacgcatc
attcctatcgctgctttaaatccttaccagggtcgatgggcaatcaaagccagagttact
gctaaaggagatcttcgacgctacaacaacgcaaagggggatggtaaggtcttttctttt
gatctgcttgactctgatgggggagaaatacgtgttacctgctttaacgctgttgtcgac
cggttttatgataccattgaggcggggaaagtgtatgtgatatcaaaaggtagcttgaaa
cctgcacaaaagaactttaaccacctgaaaaatgaatgggagatatttctggaggcgact
tcaattgtggatctttgtcccgatgaagatgcttcaataccacaacagcagttttccttc
cgacctattagtgaaattgaaaatgctgagaataattctattttggatgttattggtgtt
gtgattactgtgaatccttcagtgccaatcttgagaaagaatggcatggaaactcagaga
agagttctgaagttgaaggaccaatctgggatgagtgtggaattaactctatggggtgaa
ttttgcaacaaggaaggtcaaaagctgcaagaaatggttgattctggcttctttcctgtt
gtagcagtaaaggctggaaaagttaatgactttagtggcaagtccatcggaactatttct
tccagccagctctttataaatccagattctccagaagctatgaacttgagacagtggttt
gatcgggggggaaaagatcttgcttctcagtccatatctaaagacatagtgcctggagta
tcaagaaatgagatacgtaaaactctctcacagattaaggatgaaggtcttggtagatca
gataagccagattgggtcacagtgaaagcatatatcacttttattaagactgacaatttc
tgctacacagcttgcccgttgatgattggggacagacagtgtaataagaaagtgactaga
tcaggctcgagatggcaatgtgacagatgtaatcaagaatttgatgagtgtgattaccga
taccttctccagctccaagttcaggaccactctgggttaacatggatgactgctttccag
gaatctggtgaagagattgtaggctgttcagcgaaggagttgtacttgctaaagcatgaa
cagcaggatgatgagcgctttgcacaaaatctgttgaagggtctttttacacaattccta
ctgaagctcaaaatcaaggaagagttgtatggtgacgaacagaggctgaaagtaaccatt
gttaaagcagagaaggtcaatcatgttgctgaaactagataccttcttgatttgattcca
aaatctcgctga
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