Daucus carota (carrot): 108199795
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Entry
108199795 CDS
T05350
Name
(RefSeq) eukaryotic initiation factor 4A-3
KO
K13025
ATP-dependent RNA helicase [EC:
5.6.2.7
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03013
Nucleocytoplasmic transport
dcr03015
mRNA surveillance pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108199795
09122 Translation
03013 Nucleocytoplasmic transport
108199795
03015 mRNA surveillance pathway
108199795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108199795
03041 Spliceosome [BR:
dcr03041
]
108199795
03009 Ribosome biogenesis [BR:
dcr03009
]
108199795
03012 Translation factors [BR:
dcr03012
]
108199795
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108199795
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108199795
mRNA cycle factors
Stress granule specific factors
108199795
Spliceosome [BR:
dcr03041
]
Complex C
Other components
EJC/TREX
108199795
Ribosome biogenesis [BR:
dcr03009
]
Eukaryotic type
90S particles
Helicases
108199795
Translation factors [BR:
dcr03012
]
Eukaryotic type
Initiation factors
eIF-4
108199795
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
AAA_30
Cas3-like_C_2
Helicase_RecD
AAA_22
UvrD-helicase
CMS1
Motif
Other DBs
NCBI-GeneID:
108199795
NCBI-ProteinID:
XP_017223261
UniProt:
A0AAF0XRX0
LinkDB
All DBs
Position
8:complement(29190730..29195141)
Genome browser
AA seq
410 aa
AA seq
DB search
MAAIGGPSVIPANRSRRSTMDDEKLVFETSKGVEAILSFDHMGIKDDLLRGIYNYGFDKP
SAIQQRAVHPIISGRDVIAQAQSGTGKTSMIALTVCQIVNTSSTEVQALILSPTRELAAQ
TEQTIRAIGNHLNIKAHACIGGKSVGEDIRKLESGVQVVSGTPGRVCDMIKRRSLRTRDI
KLLILDESDEMLSRGFKDQIYDVYRYLPPELQVVLISATLPNEILEITSKFMTDPVRILV
KRDELTLEGIKQFFVAVEREDWKFDTLCDLYDTLTITQAVIFCNTKRKVDWLTMKMRENN
FTVSSMHGDMPQKERDAIMKEFREAATRVLITTDVWARGLDVQQVSLVINYDLPNNRELY
IHRIGRSGRFGRKGVAINFVKTDDIKILRDIEQYYSTQIDEMPMNVADLI
NT seq
1233 nt
NT seq
+upstream
nt +downstream
nt
atggcggcgataggcggcccctcagtaatcccggcgaacagatctcgccggtccaccatg
gacgacgagaagctcgtcttcgaaaccagcaaaggcgtggaggccatcctcagcttcgat
cacatgggaatcaaagacgatttgctccgcggtatctacaattatggcttcgacaagcct
tccgctattcagcagcgtgctgtgcatccgattatctcggggagagatgtgattgcgcag
gcgcagtctgggacggggaagacttcgatgattgcgttgactgtttgtcagattgtcaat
acgagctccactgaggtacaagctttgatattgtcacctacaagggagctggcggcacag
acggaacaaacaataagggctattgggaatcacttgaatattaaagcccatgcttgcatt
ggtggtaaaagtgtgggtgaagatatcaggaagttagaatctggtgttcaagttgtctct
ggtactccaggaagggtttgtgacatgatcaagaggagatccttacggacaagagatata
aagttattgattcttgatgaatccgatgaaatgttgagtcgagggttcaaggatcagatt
tatgatgtttatagatatcttccaccagagcttcaggtggttctgatttctgcaactctt
cctaatgagatcttggagatcactagcaagttcatgacagaccctgtccgaattcttgtg
aaacgtgatgaattgaccctggaaggaatcaagcaattctttgttgcggtagaaagagag
gattggaagtttgatacattatgtgatctatatgatactctcaccatcactcaggctgtt
atattttgtaatacaaagcgaaaggtggattggctaacaatgaagatgcgagaaaataac
tttacagtctcatcaatgcacggagatatgcctcaaaaggagcgagatgcgatcatgaaa
gaatttagggaagctgctactcgtgttctaatcactacagatgtctgggcaaggggtctg
gatgttcaacaggtatccttggtgattaattatgatcttccaaacaaccgagagctttat
attcatcgaattggtcgttctggtcgttttggacgcaagggtgttgctatcaactttgtg
aagaccgatgacatcaagatactgagggacatagagcaatattacagtacgcagattgat
gagatgccaatgaatgttgctgatttgatatga
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