Daucus carota (carrot): 108199916
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Entry
108199916 CDS
T05350
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 1 homolog
KO
K10683
BRCA1-associated RING domain protein 1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108199916
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108199916
04121 Ubiquitin system [BR:
dcr04121
]
108199916
03036 Chromosome and associated proteins [BR:
dcr03036
]
108199916
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108199916
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Negative regulators of mRNA 3' end processing
108199916
Ubiquitin system [BR:
dcr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
108199916
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Regulators of centriole replication
108199916
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA1-core complex
108199916
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCT
zf-HC5HC2H
BRCT_2
zf-C3HC4_2
RTT107_BRCT_5
zf-RING_2
zf-RING_UBOX
zf-C3HC4_3
zf-C3HC4
zf-C3HC4_4
zf-HC5HC2H_2
zf-RING_6
zf-RING_10
zf-RING_5
zf-rbx1
zf-Nse
Motif
Other DBs
NCBI-GeneID:
108199916
NCBI-ProteinID:
XP_063939260
LinkDB
All DBs
Position
8:19358952..19364811
Genome browser
AA seq
1080 aa
AA seq
DB search
MDPSSHLEKMGRELKCPICLSLLNSAVSLTCNHVFCNECIQKSMKLVSDCPVCKVPYRRR
EVRPAPHMDNLVNIYKSMEVASGANIFVSQSAPSKKLSGEENQLEADEVVGKGSKPVNQK
KPKGKRSKGHSTNSSSDTMRPSFPSNKRIQVPQHPLPETPTQPIRLEIDLGKETLTEPQR
SADVKEAGSHLDKKENQGFCPFFWLQNEEDAEKCTALTVEDTVMDTPPDIPCFSDLKDAD
DEVQCNMTPKKGTSVTSHNPDLYDSEMFEWTQRACSPELCSSPTKLQVEETDRHNDMGEE
TIAENIFINMDNKSYNAEITNSQKCANNMIAETGALACSDVDYNGNNARATRHKKRSKKA
RKCNQIKRAKLKESNKILESVAEDSGQRENVDTVGNHANMSHVEGKFNIRTNKICPSLSA
TASMPVNDSTLAKVVKSSKNISSNMLVVDLFPPLHDIDGSSESKRNKQRKKATGTCIDPK
DLAEHSSQNQNLDTVIKPINTSNSCKPKRSIEKIFRVPVATKTLLGNACISMEGVEATHQ
ADKRKAVADAFVPLNEKEGISTSRNLKRSAKQNTSNKKLERNFNRRSKVPKTTPNLDATV
RQIETDLGSGGGTVASGSMVDSKTRDQLNGTKVNCVPADNPKVIVPNDCQHNHAKDTQSS
GKLYGNLPETNTGFLGMNGVLRKCDKGPNNVQCSFCHSVEDSKASGVMVHYLNGKRVKVG
YSEAGNVIHVHQNCAEWAPNVYFEEDVAVNLEAELTRSKRIKCGCCGLKGAALGCYEKSC
RRSFHVPCAKLTPQCRWDHENFVMLCPLHASSKLPNEISKYRAEQKEKSLSRRQLPISQP
KSAIKQDDTTHSQWNSNGLSAKLVLCCSALTIAEKEIVSEFEMLSGVKVIKNWDSSVTHI
IASTDENGACRRTLKFLMGILEGKWILNIEWVKACLKANENVDEQQYEIDVDIHGIRGGP
RQGRLRHLNKQAKIFDGYKFYFIGDFQPSYRGFLHDLLIAAGGRILHRKPIAGDNEAVSS
TFIIYSLELPDKCNPSNRISIVNRRRTDAVNLASSCQAVVATNSWILNSIAACKWQNLAE
NT seq
3243 nt
NT seq
+upstream
nt +downstream
nt
atggatccctcgtcgcacctggagaaaatgggcagagaactcaaatgccctatctgctta
agtctgcttaattccgctgtttcgctcacttgtaaccacgtcttttgcaatgaatgtatt
caaaaatcgatgaaattggtttcggattgccctgtgtgtaaggttccttatcgacgtaga
gaggttcgtcctgctccacacatggataacttggtgaatatttacaagagcatggaagtt
gcttctggtgcaaacatttttgttagccaatctgcgccttcgaaaaagttgtctggtgaa
gagaaccagcttgaagctgatgaggtagttggaaaaggcagcaagccagttaaccagaaa
aagcctaaaggaaaaaggtcaaaagggcactctacaaattctagttcagataccatgaga
ccttcatttccatcaaataaaaggattcaagtgccacaacatcctcttcccgagactcca
acgcaacctataagactggaaattgatttagggaaagaaactctaactgaacctcagaga
agtgcagatgtaaaggaggctgggtctcatttagacaaaaaagagaatcagggtttttgt
ccatttttctggttgcaaaatgaagaggatgcagaaaaatgtactgcacttacagttgaa
gacactgtcatggatacacctccagatattccatgtttcagtgaccttaaggatgctgat
gatgaggtgcagtgtaatatgactcccaaaaaaggcacgtcagttacgtctcataatcct
gatctttatgatagtgagatgtttgagtggacgcaaagggcttgttctcctgagctctgt
tccagtcctacaaaattgcaggttgaagaaactgaccggcacaatgatatgggagaagaa
actatagctgaaaacatatttataaatatggacaataaatcttataatgcagaaatcaca
aattcccagaagtgtgcaaataacatgatagcagaaacaggtgctttggcatgctctgat
gtggactataatggcaacaacgcaagagctacaagacacaaaaagagaagcaagaaagca
cgcaaatgcaatcaaatcaagcgagcaaagcttaaggaaagcaataaaatacttgagagt
gtagctgaagatagtggtcaaagggaaaatgttgatactgtaggcaaccatgcaaatatg
tcacatgtggagggaaagtttaacatcagaacaaataagatttgtccttctctgagtgct
acagcatcaatgccagtgaatgactccactttggctaaggtggtaaaatcttcaaagaac
attagtagcaacatgcttgttgttgacttgtttcctccattacatgatatagatggcagc
agtgagagcaaaagaaataagcaaagaaagaaagcaacgggaacctgtattgatcctaag
gatttagctgagcacagcagtcaaaaccaaaatctggatacggtaatcaagccgatcaac
acatcaaattcgtgtaaacccaaaagaagtattgaaaaaatatttagggttcctgttgcc
acaaagacattattaggaaatgcctgtatttcaatggagggggtagaggctacacatcag
gctgataagagaaaagctgttgctgatgcatttgttccactaaatgagaaagaaggcatc
agtacaagccgaaatttgaagagatctgccaaacagaataccagtaataaaaaacttgaa
agaaatttcaatagaaggtcaaaagtgccaaaaacgacccctaatttagatgccacagtt
cgtcaaatagaaactgatttgggttcaggtgggggaacagtagctagtgggagtatggta
gactcaaaaacccgtgatcaactgaacggtacaaaggtgaattgtgttccagctgataac
ccgaaggttatagtacctaatgattgtcaacataatcatgcaaaggatactcagtcatct
ggaaagctatatggtaatttgccagaaacgaatactgggtttttgggtatgaacggagtt
ttacgcaaatgtgataaagggcctaacaatgttcagtgttcgttttgtcattctgtggaa
gactcaaaggcatcgggagtaatggtgcactacctcaatggaaaacgtgtgaaagttggt
tatagcgaagcaggaaatgtcatacatgtacaccagaactgtgcagaatgggctcctaac
gtatattttgaagaggatgtagcagttaaccttgaagctgaattgacaagaagtaaaaga
attaaatgtggctgctgtggactaaaaggggcagctcttgggtgctatgagaagagttgt
cgtagaagctttcatgtaccctgtgcaaagttaactccacagtgtcgatgggatcatgaa
aactttgttatgctatgccctctccatgcctcgtccaaactgccaaatgaaatctctaaa
taccgagcagaacaaaaagaaaaatccctttccagaagacagctgcccattagccaacca
aaatcggcaattaaacaggatgataccacacattcccaatggaactctaatggtttatca
gcaaaattagttctctgttgttcagctcttaccatagcggagaaggaaattgtgtctgaa
tttgagatgctatctggagttaaggtcataaagaattgggattctagtgtaacccatatt
attgcatcaacagatgagaatggagcatgtagaagaaccctcaagtttttgatgggaatc
ttggaggggaagtggatactaaatatagaatgggtcaaagcttgcctaaaggcaaatgaa
aatgttgatgagcagcaatatgaaattgatgttgacattcacggaattagaggtggtcct
agacaaggaagattaagacatctgaacaagcaagctaagatttttgatgggtacaagttc
tattttattggggacttccaaccttcatacagagggtttctacatgatcttttaattgct
gctggtggaagaattctgcacagaaagccaattgcaggagacaatgaagctgtatcatcg
acattcataatttatagcctggagctacctgataagtgtaacccaagcaatagaatctca
attgtcaaccgtaggcgaactgatgctgtgaatctagcaagttcctgtcaggctgtcgtg
gcaaccaattcatggattctgaactcgattgctgcctgcaagtggcaaaatcttgctgaa
tag
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integrated database retrieval system
