Daucus carota (carrot): 108199945
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Entry
108199945 CDS
T05350
Name
(RefSeq) ribonuclease II, chloroplastic/mitochondrial isoform X1
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
dcr03016
]
108199945
Enzymes [BR:
dcr01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
108199945
Transfer RNA biogenesis [BR:
dcr03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
108199945
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GFIT
Motif
Pfam:
RNB
CSD_RNase_II
HTH_RNase_II
RNase_II_C_S1
Motif
Other DBs
NCBI-GeneID:
108199945
NCBI-ProteinID:
XP_017223467
UniProt:
A0AAF0XQH6
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Position
8:2003001..2014489
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AA seq
809 aa
AA seq
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MAVSVRAVNNCAVLRSVAAPPLSVIRHRNFTSLLQFRDSRRRSSKFSEIRYSFHQSRCVL
GVRSYSLQSLFDSIMEEFESMRKNRSRVSATKNKLEIITSENLVEDKVEKRALKKGLLLE
FKKDSERFLLAVTQKPDGRKNWMVFDQNGVTTSIKPQQITYIVPGVENFNNTDISDFIQK
AHNNLDTTLLEFAWVELLESKKSVTTEELAEMIFGSSEPLESYCAHLLVSRDEIYFTSVH
SKGPAVYGPRTTVQVEERQRRKLAQEAADKEFEEFIKLLKSARGLPLNSKPPKSSWKVDE
SVWRKIESLEAYALDACKNDEQKTAGTILKAMGMVNKSSSAVGLLIDIGYFPVHVNLDLL
KLNIRTDYESDILSAAENLLLESSDADEVDRVNLTHLKVYAIDVDEADELDDALSASRLQ
DGRIKVWIHVADPSSLVQPGSILDREAFKRGTSVFLPTATYPMFPEKLAMEGMSMKQGKL
CNAVTVSVVLHSDGSIAEYNIENSFIRPTYMLTYESASELLHLNLSEEAELRLLSEAAAL
RLQWRREQGAIETTSLETRIKVANPDDPDPTIKLYVENQAEPAMRLVSEMMILCGESVAT
FGSCNNIPLPYRGQPQSDIDLSAYAHLPEGPVRTSAIIKIMRAAEMDFRKPIRHGIMGLP
GYVQFTSPIRRYMDLLAHYQVKAFIRGESPPFSAGQLEQMSSNVNMQAKVAKKLFNSSLR
YWILEYLRRQPKEKRFRALILKFVKDRIAALLLTEVGFQATAWVSVGSQIGDEVVVRVAE
ADPRDDSLSLKEIVQDFSSSNSQDISSGA
NT seq
2430 nt
NT seq
+upstream
nt +downstream
nt
atggcggtctctgtacgcgccgtgaacaactgcgccgtcctccgctccgtcgccgcgccg
ccgttatccgttatccggcaccggaacttcacctccttactccagttccgagattctcgc
cgccggagctcgaaattttctgagattagatactcatttcatcagtcgagatgcgtgtta
ggtgttcgaagctattcgctgcagagtctgttcgattctattatggaagagtttgaaagt
atgcgaaaaaatcgcagcagagtttctgccactaaaaacaaattagaaattataaccagt
gaaaaccttgttgaagataaggtggaaaagagggcactaaaaaaggggctgttgctggag
tttaaaaaagattctgaaaggtttttgctagcagttactcagaaacctgatggccggaag
aactggatggtttttgatcagaatggtgtcacaacttctattaaaccacaacagataact
tatattgttcctggtgtcgaaaattttaacaacacagatatttcagattttattcagaag
gctcataataacttggataccacgcttcttgagtttgcttgggttgagcttttggagagt
aagaagtctgtcactacagaagaattagctgagatgatttttggtagttcggagcctctt
gagagctattgtgctcatctattggtttcaagagatgaaatatacttcacatctgtacat
agcaaaggtcctgcagtttatggaccccgaaccactgttcaggtagaagaacgtcaacgc
cggaagcttgctcaggaagctgctgataaggaatttgaggaatttatcaaattactaaaa
tctgccaggggactgcctctaaattcgaagccccccaaatcttcatggaaagttgatgag
agtgtttggcgtaaaattgaatctcttgaagcttatgcccttgatgcttgcaaaaatgat
gaacaaaaaacagcagggacgatcttgaaggcaatgggaatggttaataaatcttcttca
gcagttggtctcctcattgatattgggtatttcccggtgcatgtaaatctcgatttgtta
aagctcaacattcgtacagattatgaaagtgatattctatctgctgctgaaaatcttctc
ttggaatcatctgacgcagatgaggtggacagagtaaatttgactcacttgaaggtttat
gcaattgatgtcgatgaagctgatgagcttgatgatgcattaagtgcatcaagactgcag
gatggaaggattaaggtctggatacatgttgcagacccaagtagtttagttcaaccaggt
agcattttggacagggaggcatttaaaagaggaacttcagtgttcttaccaactgctact
tatccaatgttccccgaaaagcttgcaatggaagggatgagcatgaagcagggaaagctt
tgcaatgcagttacagtatctgttgtactgcattctgatggcagcattgcagagtacaac
attgaaaattcttttatcagaccaacttatatgctgacatatgagagtgcttcggagctt
cttcatttaaatctctcggaggaagctgaactgagacttttatccgaggctgcggcactt
aggttgcaatggcgacgggagcagggtgcaatagagacaacctcactagaaacacgaatc
aaggtggctaacccagatgatccagatccaaccattaagttatatgtcgaaaaccaagca
gagcctgcaatgcgacttgtgtctgagatgatgatattatgtggagaatctgtagctacc
tttggctcttgtaataatattcctctaccctatagagggcagccccaatcagatattgat
ttatctgcgtatgctcatcttcctgaagggcctgtaagaacttctgctatcatcaagatc
atgcgggcagctgagatggatttcaggaagcctatccgccatggaataatgggacttcct
ggttatgttcagtttacatctcctatccgcagatatatggatcttcttgctcattatcag
gtgaaagcatttataagaggtgagagcccgccattttcagctggtcagctggaacagatg
tcatcaaatgtaaatatgcaggctaaagttgcaaagaaactatttaacagcagtctgcgg
tattggatactagaatacttgcgaagacagcccaaagagaaaaggttccgtgcattgata
cttaaattcgtcaaagatcgaattgcagctttgctactaacagaggtaggatttcaagct
actgcatgggtttctgttgggtcccagattggtgacgaagttgtggttcgggtggcagaa
gctgatccacgtgatgattctctttccctcaaggagatagttcaagacttttccagcagc
aatagtcaagatatcagctctggtgcatga
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