Daucus carota (carrot): 108200077
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Entry
108200077 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108200077 isoform X1
KO
K13144
integrator complex subunit 7
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108200077
Spliceosome [BR:
dcr03041
]
Other splicing related proteins
Proteins involved in snRNP biogenesis
Integrator complex
108200077
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
INTS7_C_plants
INTS7_N
INTS7_HB
RVT_thumb
IRX15_IRX15L_GXM
Dor1
Mntp
Motif
Other DBs
NCBI-GeneID:
108200077
NCBI-ProteinID:
XP_017223627
UniProt:
A0AAF1BDL7
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Position
8:complement(29210525..29216278)
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AA seq
1142 aa
AA seq
DB search
MERIPAACAMEWSIELEKSLRSTTDKSLKTIKQLESKLNWWNSEPRLTAAEYNFFNLLPG
EDNLYANAILFRLIDAFSRRDKHFKLCIAKVFMSEFKHRKKRGSADGVLSRNRFVNYLEL
FRRVKLVFEIGDVEVRSLCLSLFGCWANFAHDNAEIRYIILSSLVSGDVLEVKAALFAAG
CFCELSEDFACVVLEMVANMVSSCHVAEDVKIAGVRCLAKVGYSYTLAIKAYETGLKLLS
DSSEGDLSVAMLISLSRIAVKSRLLTSTQVKVLFSFLSQDRTFALQATSLKCLRYIVARG
SHNFQASIDVVRMLLCRLSESTIPSALQCDALQILHKIILLNVFSFSYHDMLELLSELLV
VVENDIQSSTFLNSVLYVLVDIYCKFVERADSKVNGEKLHHLERADPKVNGEELHRLERA
GSKVNGEEPHHLASRMISSIVYRIFLVKEVSEVKSLLNLLIHLVQTPMVLAGLVLEKIID
SVKLMSKGKRTLSSHGTEYGEKLMLYICEVLIYCLDKVDKTGVLTTEVHAPMKLLVEDAH
RYNSFDCNTRIVSSVLYMSYIAHSCLLNNIKETDNFNKTGASDQSDFVQLAISTLKCSSE
LLTRKDNWLAYKAGKSAACHGTWFVAAFIFRKLIKLAQSHSCVSWLNLLADFTHSEMQLQ
FLLFPKQCSDLWTYLESHGISTSTLGSANHHDIIVNACKILHSSEEVLNLTSRSAICFSF
QHWFISLRLCILENVVDMFRLLDSISDAKDHNNQHTKEIHLVENSQCSQTLNSLVHPLTQ
ISLNFKKLAQELDLIAISFFGMDNKSVLIISALALSCSLLAFSVGFVLCIPSMQAMNCFT
HFGSAKCKDSLYPMLILDLLNRLWHVDREISSKLVLLFDGCGPPRSSHTPQPKNHIWDTG
YKTRNLVTLCSFAVGQAVGLQNDVNRLHNNTILPQQAIDGFHLLLNITKEWMQIPFLTPS
YFFHIRSPVSSQLFTSNIDARHGDGLSICKGSHLSLNLCLQLRNMPQDLSSRLPKLYCVL
STNASLQVPCPIKGEAKPKLGFQDWRTDDLIDMNKKLYQYVIGHKSKTTLHGSDDSDDCQ
NREVLMCFETNMKGQGFSTCLLDVSDFPVGSYRIKWHSCGIDSQGSYWSLLPSNSGPIFT
VH
NT seq
3429 nt
NT seq
+upstream
nt +downstream
nt
atggaacgaattccagcagcatgtgcaatggaatggagcatcgagctcgagaaatcactc
cgctcaacaactgacaaatctctcaaaactattaaacaactcgagtcaaaactcaattgg
tggaacagtgaacccaggttaacagccgcagagtacaatttctttaacctcctccccgga
gaagataatctctacgctaatgcgatactttttcggcttattgatgcgtttagtaggcgc
gataagcatttcaaattgtgtattgcgaaagtttttatgtcggagtttaagcatcggaag
aagagggggagtgcggatggggttttgtcgagaaatcggtttgttaattatttggaattg
tttaggagagttaagttggttttcgagattggggatgttgaagttaggtcattgtgtttg
agtttgtttgggtgttgggcgaattttgcacacgataatgcggaaattaggtatataatt
ctgtccagcttggtttcgggtgatgttttggaggttaaggccgctttgtttgctgctgga
tgcttttgtgaattgtcggaagactttgcctgtgttgttttggagatggtggctaatatg
gtttcatcgtgtcatgtagcggaggatgtgaagattgcgggagtgcggtgtttagctaaa
gtcgggtactcatatacactcgcaattaaagcttatgagacaggtctaaagttgctctca
gattcctctgaaggggacctctctgttgccatgctaatctcactttcgaggattgctgtc
aaatcaaggctattaacttctacacaggtgaaagtgctcttttcatttttaagccaagat
agaacattcgctttacaagcaacatcattaaaatgtctgcggtacattgtagcaagaggt
tcacataattttcaagcaagtatagatgtagtcaggatgctattatgcaggctgagtgaa
tctacaattccatcagccttgcaatgtgatgctcttcagattttgcacaagatcatttta
ctaaatgttttcagtttttcctaccatgacatgcttgaactgctttctgagttgttggtg
gtcgttgagaatgatattcaatcctccacatttctgaacagcgtcttgtatgttctagta
gatatatattgcaagttcgtggaaagagcagattcaaaggtaaatggagaaaagctgcat
catctggaaagagcggatccaaaggtaaatggagaagagctgcatcgtctggaaagagca
ggttcaaaggtaaatggagaagagccgcatcatctggcatcacggatgatctcttccatc
gtttatagaatcttcttggtaaaggaagtatcagaagtaaaaagtttgctaaacctccta
attcacctagttcaaacacctatggttcttgctggtctggtgctggaaaagattattgat
tctgttaaattgatgagcaaagggaaaagaactttgtcaagtcatgggactgaatatgga
gaaaagcttatgttatatatttgcgaagttttaatttactgccttgataaagtggacaaa
actggcgtcttgactactgaagtccatgccccaatgaagcttctagtggaagatgcacat
aggtacaactcatttgactgtaatacccgcatagtctcttccgtcttgtatatgtcttat
attgcacatagttgcttgttgaacaatatcaaagaaactgacaattttaataagacgggg
gcatctgatcagagcgactttgttcagcttgcaatttcaacccttaagtgctccagtgaa
cttttgacaaggaaggataactggttggcttacaaagctggaaaatctgctgcatgtcat
ggaacctggtttgtagctgcttttatattccgcaaactaataaaattggctcaatctcat
tcttgtgtctcatggttgaacttgttggcggatttcactcattctgagatgcaactccag
tttcttcttttcccaaaacaatgctctgacttgtggacctatttagagagtcatgggatc
tctacttccactctgggctcagctaaccatcatgatattattgttaatgcctgtaagatc
cttcactcttcagaggaagtgctaaatttaaccagcagatctgctatttgttttagcttc
caacattggttcatatccctgagattatgtattctggaaaatgttgttgatatgtttaga
cttttggattccatcagtgatgccaaagaccataacaaccaacatacaaaagaaattcat
ttggtcgaaaattcacaatgctctcaaactttgaactccttggtgcatcctctcactcag
atatcattaaatttcaagaagctagcacaagaacttgacttgattgccatatcatttttt
ggtatggataacaaaagtgtactgattatttcagcattagcattgagttgttcattgttg
gcatttagtgttggatttgttctttgtattcccagtatgcaagctatgaactgttttaca
catttcggttcagcaaagtgcaaggacagtttatatccgatgcttatactagatctttta
aaccgcttgtggcatgtagatcgtgaaatcagttccaagctcgtgttgctttttgatggg
tgtggaccgcctaggagctctcataccccgcaacccaaaaatcatatatgggacactggt
tataaaacaagaaatttagttacactatgtagttttgctgttggacaagctgttggcttg
caaaatgatgtaaacagactacataacaatactatcttaccgcaacaggctattgatggc
ttccatcttctgttgaacattaccaaggaatggatgcaaattccctttctgactcccagt
tacttctttcacataaggtctcctgtatcttctcagctatttacttcaaatatagatgca
agacatggagatggattatctatttgtaaagggtctcatctttcgttgaatctttgcctt
cagttgagaaacatgccacaagatctgtcatcacggctgcccaagctgtactgtgtcctc
tctactaatgcatctttgcaggtaccctgtcctattaaaggagaagctaaaccaaaatta
ggttttcaagattggagaactgatgatttaatagatatgaacaagaaactatatcaatac
gtgatagggcacaagagcaagacaactctgcatggtagtgatgattctgatgattgccaa
aatcgggaggtgttgatgtgttttgaaactaacatgaaaggtcaagggttctcaacctgt
ttactggatgtctctgattttcctgttggttcatacagaattaaatggcatagctgtggt
attgacagccagggttcctattggagtcttcttccttcaaattccggtccgatatttact
gtacattga
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