Daucus carota (carrot): 108200089
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Entry
108200089 CDS
T05350
Name
(RefSeq) WD-40 repeat-containing protein MSI4
KO
K10752
histone-binding protein RBBP4
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03082
ATP-dependent chromatin remodeling
dcr03083
Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108200089
03083 Polycomb repressive complex
108200089
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dcr03036
]
108200089
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Nucleosome assembly factors
Histone chaperones
CAF-1
108200089
Histone modification proteins
HAT complexes
HATB complex
108200089
HDAC complexes
Sin3A-HDAC complex
108200089
Polycomb repressive complex (PRC) and associated proteins
PRC2.1
108200089
PRC2.2
108200089
Centromeric chromatin formation proteins
Kinetochore proteins
MIS16-MIS18 complex
108200089
Heterochromatin formation proteins
Other heterochromatin formation proteins
108200089
Chromatin remodeling factors
NuRD complex
108200089
NuRF complex
108200089
NuRF complex (fruit fly)
108200089
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
CAF1C_H4-bd
WD40_Prp19
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
WD40_WDHD1_1st
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WDR55
Beta-prop_EML
Beta-prop_IFT122_1st
WD40_MABP1-WDR62_2nd
EIF3I
WD40_RFWD3
Beta-prop_SPT8
eIF2A
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
ANAPC4_WD40
Beta-prop_DCAF12
Motif
Other DBs
NCBI-GeneID:
108200089
NCBI-ProteinID:
XP_017223645
UniProt:
A0AAF1B9F9
LinkDB
All DBs
Position
8:complement(5114845..5122502)
Genome browser
AA seq
483 aa
AA seq
DB search
MESTPTAQQPKKRGRPKGSKSKEERETPSSVKSSSVVKMRGTAEKKVVGAGVDDKYTQWK
SLVPVLYDWFANHNLIWPSLSCRWGPLLEEANQKNRQRIYLSEQTDGSVPNTLVIANCDV
VKKRVAAGDHIANFNEESRSPFVKKYKTIIHPGEVNRIREFPQYNSIVATHTDCPEVLIW
DIEAQPNRHAVFGAAESRPDLVLTGHEDNAEYALAMSPTEPYVLSGGKDKNVILWSLQDH
IAAASGGSIIKAAENPSIAPRGIFKGHEDTVEDVQFCPSSAQEFCSVGDDSCLILWDART
GSNPVIKVEKAHNADVHCVDWNPLDINLILTGSADHSVCMFDRRNLSSPVHKFEDHKAAV
LCVQWCPDKSSVFGSSAEDGSLNIWDYERIGKKELGTRSPNCPPGLFFKHAGHRDKVVDF
HWNASDPWTVVSVSDDVDTSNGGGTLQIWRMSDLIYRPEEEVLAELEQYKAHVVECTSKS
PKI
NT seq
1452 nt
NT seq
+upstream
nt +downstream
nt
atggaatcaacaccaacagcgcagcagccgaagaagagaggaaggccaaagggttcgaag
agcaaggaggagagagagacgccgtcttctgttaagagcagttctgttgtgaagatgcga
ggcacggctgagaagaaagtggtgggtgctggtgtggatgataagtatactcagtggaag
agccttgttcccgttctttatgactggtttgctaaccacaatctcatctggccctctctt
tcttgccggtggggtcctctgcttgaggaagcaaaccaaaagaatcgacaacgcatttac
ctctccgaacagactgatggcagtgtaccaaatacactggttattgcaaactgtgatgta
gttaaaaaaagggtcgcagcaggggaccacattgctaatttcaatgaggaatcacgctcg
ccgttcgtgaagaagtacaaaactataatacatcccggagaggtgaacagaataagagag
tttcctcagtacaacagcattgtggcaacacatacagactgtccggaggttctcatatgg
gatattgaggctcaaccgaaccgccatgcagtctttggagctgctgaatctcgcccagat
ttggtactgactgggcacgaggataatgcagaatatgcccttgcgatgtctcctactgag
ccatatgtgctctctggagggaaagacaaaaatgtaatcttgtggagtttgcaagatcat
atagctgcagcttctggcgggtcgattattaaagctgctgaaaacccttctatcgctcct
cgcgggatatttaaaggccacgaggatactgttgaagacgtgcaattttgcccatctagt
gcacaggaattttgcagcgttggagatgattcatgtctgatactttgggatgctcgaact
ggttccaaccctgtaatcaaggttgaaaaggctcacaatgctgatgttcactgtgttgat
tggaatcctcttgatataaaccttattttaactgggtctgcagatcattctgtttgcatg
tttgatcgccgaaatttaagttctcctgttcataaatttgaagatcacaaagcagctgtt
ctctgtgttcagtggtgcccagacaagtcatctgtatttggaagctctgcggaggatggt
tctctgaacatctgggattatgagaggattgggaaaaaggaactagggaccagatcgcct
aattgtcctccagggttatttttcaagcatgcaggacacagagataaagttgttgacttc
cattggaatgcgtcggacccatggacagtcgtcagtgtatctgacgacgttgacacctct
aatggaggtggtacactacagatatggcgcatgagtgacttgatttacagaccagaggag
gaggttctggctgagcttgagcagtataaagctcatgtggtggagtgtacttccaagtcc
cctaaaatttga
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integrated database retrieval system
