Daucus carota (carrot): 108201188
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Entry
108201188 CDS
T05350
Name
(RefSeq) E3 ubiquitin-protein ligase UPL3
KO
K10590
E3 ubiquitin-protein ligase TRIP12 [EC:
2.3.2.26
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108201188
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dcr04121
]
108201188
Enzymes [BR:
dcr01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.26 HECT-type E3 ubiquitin transferase
108201188
Ubiquitin system [BR:
dcr04121
]
Ubiquitin ligases (E3)
HECT type E3
108201188
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HECT
ARM_ARMC5
PDS5
Motif
Other DBs
NCBI-GeneID:
108201188
NCBI-ProteinID:
XP_063940713
LinkDB
All DBs
Position
1:41940953..41950542
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AA seq
1870 aa
AA seq
DB search
METRSRKRAEAPPSSSSGVSTRASKRRRLTSAVANSRILTKGVSMDESSGSGHRGRRGKN
HVVDKVKESSDKGKEKEIDVRVRGNEVERMLGLKIESNRDDDEDGDSEDEDSDEDGVGML
HSNLTSASSALQGLLRRLGAGLDDLLPSSAMAAASGSHQSGRLKKILVGLRADGEEGKQV
EALTQLCDMLSIGTEDSLSTFPVDSFVPVLVGLLGYESNPDIMLLAARAITHLCDVLPSS
CSAVVHYGAVSCFVNRLVAIQYMDLAEQSLQALKKISQEHPTACLRAGALIAVLSYLDFF
STGVQRVALSTAANICKKLPSDASDFVMDAVPILTNLLQYHDAKVVEHASICLTRITEAF
ASSSDNLDQLCNHGLVTQAASLISTTSSGGGQASLSTSTYTGLVHLLSTCASGSPLGAKT
LLLLGISGILKNILSGSGLVAGMSATPALSRPPEQIFEIVNLANELLPPLPEGTISLPAS
CNIFQKGSHLKKPPASSSEVQVDSSRCSYEISTRKKLLNEQPELLQQFGMDLLPVLIQIY
GSSVNGSVRHNCLSVIGKLMYFSSADMIQSLLSGTNISSFLAGVLAWKDPQVLVPALQIA
DILMEKLPGTFSNIFVREGVLHAVDALILPGSTSTLISQASLCELANDSITGSSRSRRYQ
RRGENSSLNVNSTDESKYSIPTIGSPPSATEIPSVNSNIRMAVSTCAKTFKEKYFRTNPG
VVDAGVTVDLLNLKNLCTRLNAGIQDGRTKSKGTSRSTGSRIANISDSEEDKLVRVISEM
LIELSKGDGVSTFEFIGSGVVDALLNYFSCGYTTKEKMSEANLSKLRQQAIRRYKSFVAL
ALPSGVLEKNEAPMSILVQKLQNALSSSERFPVVLSHSARSSSGNVRLSSGLSALSQPFK
LRLCRSQGEKSLRDYSSNVVLIDPLATLAAIEDFLWPRVQRADSVQKPAESIGNLESGKA
PTGAGASSLFTPTPAYTTRRHSTRSRASIVINENTKKESLQERSTSLSKGKGKAVLKTAQ
EDARGPQTRHAARKKAALDKDAEMKPAEVDSSSEDEDLDISPIEIDEALVIEDDDISDED
DDDHDDLLRGDSLPLCTPDRVHDVKLGDSTESSPIGPTPSSSQTNPARGSSSRATTDKGS
DSGNFRSGNSFGSRGAMSFAAAAMAGLASSNGRGIRGARDRQGRLIFGHNEQPKLVFSAA
GKQLNRHLTIYQAVQRQLFLDEDDDERYNGSDFVSSDGSRLWGDIYTITYQRADSQADRG
SAEAVSSTSPGKSSRTGSALNSTVNPSLQHSSLLDSILHVELPCDLEKSNPSYGILALLR
VLEGLNQLAQRLRVEAATNSFAEGKISSLDEIIVTGVRVPIEEFINSKLTPKLARQIQDA
LALCSGSLPSWCYQLTRACPFLFPFETRRQYFYSTAFGLSRALHRLQQQQGADGLGSMNE
REVRVGRLQRQKVRVSRNRILESAAKVMEMYSSQKAVLEVEYFGEVGTGLGPTLEFYTLL
SHDLQKVGLGMWRSNSYDKSAVESDTVHQKDGKRISNISQASRDLIQAPLGLFPRPWPPS
DGSDVGQFNKVIDYFRLLGRVTAKALQDGRLLDLPLSTAFYKLILGQELNLHDILSFDAE
LGKSLLELQALICRKQYLQSTRGQDHEAADIHFHGASVEDLCLDFTLPGYPNYVMKPGDE
MVDINNLEEYISLAVDATVRVGIFKQLEAFRAGFNQVFDIAALQIFSPDELDYLLCGRRE
LWKMESLADHIKFDHGYNAKSPAIVNLLEIMGEFTPEQQRAFCQFVTGAPRLPPGGLAAL
NPKLTIVRKHSSTVGNMSNVPGVSESADDDLPSVMTCANYLKLPPYSTKEVMYKKLLYAI
SEGQGSFDLS
NT seq
5613 nt
NT seq
+upstream
nt +downstream
nt
atggaaactcgtagccgcaaaagggcagaggcccctccttcttcttcatctggtgtgtct
actcgtgcttcaaaacgccgtcgtttaacctctgctgttgctaattcaaggatcttgact
aaaggtgtgagtatggatgagtcttcgggttcgggtcatcgcggtcgtcgtggcaagaat
catgttgtggacaaggttaaggagagttctgacaaagggaaagagaaggagattgatgtt
agggttagggggaatgaagttgagaggatgttggggttaaagattgagtcgaatcgagat
gacgatgaggatggggatagtgaggatgaggatagtgatgaggatggtgtggggatgttg
cattctaatttgacttctgcaagtagtgcattgcaaggcttgttgaggagattgggggct
ggattggatgatttgcttccgtcttctgcaatggcagctgcgtccggttctcatcagagt
gggagattgaagaagattttggtggggttgagggctgatggtgaggaagggaagcaagtt
gaggctttgactcagctttgtgatatgctttccattgggactgaggattcgcttagtaca
ttcccggtggattcttttgttccggtgcttgtagggttgttggggtatgagagtaatcct
gatattatgcttcttgcagctagggctattacacatttgtgtgatgtgcttccgtcttcc
tgttcggctgtggtgcattatggtgctgttagttgttttgttaacagattggttgcgatt
cagtatatggatttggctgaacagtctctacaagctctgaaaaagatatcccaggagcac
ccaactgcttgcttacgtgccggtgcattgatagcagtgttgtcatatcttgacttcttc
tcaactggagtccagcgtgtggcattatctactgctgcaaatatttgtaagaagttgcct
tctgatgcatctgattttgtaatggatgctgttcctatacttactaatctacttcagtat
catgatgccaaggttgtagagcatgcttccatctgcctgactaggattaccgaggctttc
gcttcatcttctgataatctggaccaactgtgcaatcatgggctggttacacaggcagcc
tcactaatatctaccactagctctggaggcggccaagcttctctcagcacatccacatat
acgggattggtacacttgctttcaacatgtgcaagcgggtcaccactaggagcgaaaact
ttactactactggggatcagtggcattcttaaaaatatattatctggttctggtcttgtc
gcaggcatgtctgcaacccctgctttaagcagaccaccagagcagatttttgagattgtg
aatctagcaaatgagcttcttcccccgttacctgaaggaactatttctcttcctgcaagt
tgcaatatatttcaaaagggatctcatctaaagaagcctcctgctagcagttctgaagta
caagtagattcttctagatgcagttatgaaatttcaactcgtaagaaattattaaatgaa
cagccagagcttcttcaacaatttggaatggaccttcttcctgttctaattcagatctat
ggatctagtgtgaatggttctgttcgtcacaattgcctttctgttattgggaagctcatg
tactttagcagtgcagatatgatacagtccttgttaagtggaacaaatatatcgagtttc
ttagctggggttttagcttggaaggatccgcaagttttggtgcctgcccttcaaatagcg
gatattctcatggaaaaacttcctggaactttctccaatatattcgtaagagaaggtgta
ttgcatgctgtagatgcactaatattaccaggatctaccagtactctgatctcccaggcg
tcactatgcgagttggcaaatgattctataactgggtcctcgcgttcaagacgttaccaa
agacgaggtgaaaactcgagtttaaatgttaactccacagatgaatccaaatattcgatt
ccaactattgggtcacctccaagtgcaactgaaattccttctgttaactccaatattcgt
atggctgtaagtacatgtgccaaaactttcaaagaaaagtacttccgcacgaatcctggt
gtggtcgacgctggggttacagttgatcttttaaatttaaaaaacctttgcacaaggttg
aatgctggtatccaagatgggaggactaaatcaaaaggaacatccagatctacgggttca
cgtattgctaatatttctgatagtgaagaagataaattggttagggtgatatccgagatg
ctaattgagctaagcaaaggggatggtgtgtccacttttgaattcattggtagtggtgta
gtggatgctctgctgaactacttctcctgtggatacactaccaaggagaaaatgtcagaa
gctaatctgtctaagctccgacaacaagcaattagaaggtataaatcatttgttgcactt
gcacttccttcaggtgttcttgaaaaaaatgaagcgccaatgagtatcttagttcagaag
cttcaaaatgcattgtcctcctctgagcgttttcctgtcgtactgagccatagtgcaaga
tcgtctagtggtaatgtccgactctcttctggtctgagtgctctgtctcagccattcaag
ttgcggctgtgtagatcacaaggagaaaaatctctccgtgattattcgtcaaacgttgtt
ctgattgatccgttagcgactctagctgctattgaagacttcctatggcctcgagtacaa
cgagctgatagtgttcagaagcctgcagagtctattgggaatcttgagtctggaaaagct
cctactggagctggtgcttcatcactatttactccaacccccgcttatactacgcgtcgt
cattcaacaagatctagagcatctatcgttattaatgaaaataccaagaaggaatcatta
caggagaggagcacaagcttatctaaagggaagggcaaagctgttttgaagacagctcaa
gaggatgcaagaggacctcagacaagacatgctgctcgtaaaaaagcggctctggataaa
gatgctgaaatgaaacctgcagaagtagattcttcttctgaggatgaagatctggacata
tctcctattgaaattgatgaggctttagtgattgaagatgatgatatctccgatgaggat
gatgacgaccatgatgatctattgagaggtgattctcttcctctttgcacgccggacaga
gtgcatgatgttaaattaggtgattcaactgaaagtagtcctattggcccaacaccaagc
agtagccagacaaacccagctcgtggttctagcagcagagctacaacagacaagggctcg
gattctggtaatttcaggagtggaaattcttttggttcaaggggtgcaatgtcttttgct
gcagctgctatggccgggcttgcatcttcaaatggtagaggtatcaggggagcaagagac
cgacagggaagactcatctttggtcataatgagcaacccaaattagttttttcagctgct
ggtaagcagctaaatagacatttgaccatctatcaggctgtgcagagacagcttttcctt
gatgaggatgacgatgagagatataatggtagtgattttgtttctagtgatggaagcaga
ctgtggggtgacatctataccatcacatatcagagggctgacagccaagctgacaggggt
tcagctgaggcagtaagttctacatcgcctggtaaatcatcaaggacgggttctgctctt
aattccactgttaatccatcattgcagcactcatcacttttagatagtattttgcatgtg
gaattaccttgtgatcttgaaaaaagtaatccatcatatggcatattggcactattacgt
gtattagagggattgaatcaactagcacaacgtttacgtgtcgaggcagcgactaatagt
tttgctgaaggaaagatctctagcttagatgagattattgtgacaggtgtcagggttccc
atcgaggaatttatcaatagtaagcttactccgaaattagctcgacagattcaagatgca
ctcgccctttgtagtgggagtcttccatcttggtgctaccagttgacaagagcatgtcca
ttcttgtttccttttgagacccggcgtcagtatttctattctactgcttttggattgtct
cgtgcactgcatcgacttcaacagcagcagggtgcagatggtcttggttcaatgaatgaa
agagaggtccgggttgggagattacagaggcagaaagttcgtgtatctcgaaatcgcatt
cttgagtcggcagcaaaggttatggagatgtattctagtcaaaaggctgttctagaagta
gaatattttggcgaagttggtactggattagggcctaccttggagttttacacccttttg
agtcacgacctacagaaggttggacttggaatgtggagatctaattcctatgataaatca
gcagttgaaagtgatacagttcaccagaaagatgggaagaggataagcaatattagtcag
gcatctagagatcttattcaagcacctcttggtttgttcccgcggccttggccaccatct
gatggctctgatgttggtcaatttaacaaggtaattgattacttcagacttcttggtcgc
gtgacagccaaggctcttcaagatggacggcttctggacttgccattatctaccgcattt
tataagcttatccttggtcaagaactcaatttgcatgacattctttcttttgatgccgaa
ctggggaagtcgcttctagaactacaagcccttatttgcaggaaacagtatttacaatca
acaagaggccaagatcatgaagctgctgatatacacttccatggggcttcggtagaagat
ctttgtctggattttacactgcctggatatcctaattacgtcatgaaaccaggcgatgag
atggttgatataaataatttggaagagtatatttcccttgccgttgatgctactgtaaga
gttgggatctttaaacagctggaggcatttagagctggctttaatcaggtctttgacatc
gcagctttgcaaatattttccccagacgaattggactatttgctttgtggccgtagagag
ttgtggaagatggagtcgcttgcagatcacattaagtttgatcatggctataatgcaaag
agccctgcaattgtaaatttacttgagattatgggagaatttaccccagagcagcagcgg
gctttctgtcagtttgtgactggtgcacctcggcttcctcctggcggtttggcagcactg
aatccaaagctgactattgtgagaaagcattcgtcaactgtcgggaacatgtcgaatgtg
cccggtgtgtcagaatcagccgatgatgatttaccaagtgtgatgacatgtgcaaattac
ttgaagcttcctccttattctaccaaggaagtcatgtacaagaagctactatatgctata
agtgaaggacagggatcttttgatttgtcatga
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integrated database retrieval system
