Daucus carota (carrot): 108201303
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Entry
108201303 CDS
T05350
Name
(RefSeq) endoribonuclease Dicer homolog 2 isoform X1
KO
K11592
endoribonuclease Dicer [EC:3.1.26.-]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
dcr03036
]
108201303
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
108201303
microRNA pathway
RISC loading complex
108201303
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ribonuclease_3
Ribonucleas_3_3
DEAD
Helicase_C
ResIII
Dicer_dimer
PAZ
dsrm
Cas3-like_C_2
SNF2-rel_dom
Motif
Other DBs
NCBI-GeneID:
108201303
NCBI-ProteinID:
XP_017225087
LinkDB
All DBs
Position
1:18830448..18840872
Genome browser
AA seq
1438 aa
AA seq
DB search
MTILIETTADHSQENQAVDMPLVQTAEQLPADYLPFARSYQLDALEMAKGQNTIVYLETG
SGKTLIAIMLLRSYAHLLRKPSTFLAVFLVPTVVLVSQQAEVVQMHTDLKVGRYWGEMGV
DFWNAADWKKQQDEFEVLVMTPQILLNALRHSFLKLETIRILIFDECHHARRRHPYACIM
TEFYHHHVKANDLQLPRILGLTASLINNKGSSDRIRCWNDIRELENLMNSKVFTCSSESA
IAEYIEMSTPKLKTYRHVAFPCSLFSKISIQLKRLHEKFICVIENANMEDSQKENTRQRL
SKLCSTFSFCLTELGLWLALKAADSLSSQGSEMLIWQQLDKSGERIITDFSLDVFKVLSG
YIPSDPNWSISDDMEANVGNGYLSTKVICLFDSLLQRRGLIDLRCIVFVERVITAIALCR
LLNVVLPSLSGWRTEYLAGSNTRLQLQSRKAQNIIVEEFRKGKVNIIVATSILEEGLDVQ
SCNLVVRFDPPSTVRSFIQSRGRARMHNSEFLILVKSGDNSSITRVDNYLSSGQVMRQES
LRHAALPCQPLDTEIYNEVFYRVDSTGAVVTLSSSVSLIYFYCSRLPSDGYFKPLPRCNI
DKELQKCTLYFSKSCPLPSITVHGNFKTLKQLACLEACKKLHMLGALTDNLVPDMVEEED
AEELGHLNYVDEHDIYVPAELVGQGLNSGAKRYYCYLLELERNFTYDIEIDNLMLAARNE
LKFDEGNNLAFELEVERGIVIVRIKYATPISLTSEEVLKCKKFQVNILSVLHNKNYNKLK
ERLDVIHPPEDLDVYDYLLLPTTGSQQSLYIDWRSVDSVLFRSENIIHDHARCPLPKDQY
NIVYTRSGLVCRCVVENSLVCTPHNGYIYCILGTLYGVNGSSVFNLRDGESSTYKDYYEQ
RHGINLQFEREHFLKGRHIFTVQNHLHKYTKQKEPEQSTAYVELPPELCSIIMSPISVGT
CYSYSFASAIMHRIESLLIASSLKKMHADYCIQNAIATPKIPTMKVLEAITTKKCQEKFN
LESLETLGDSFLKYAACQQVFKMHQDKHEGILSIKKNKIISNANLCKLGCRRKLQGLIRN
EPFDPKMWIIPGDQMEAFHEVQLSTTTKVFTKGIRKIKSKVVADAVEALIGVFLSCDGEP
AALSIMTWLGIEVDFFNIPYKRSFSAHPEELINISYLESILNYSFTDASLLVEALTHGSF
MLPQVPQCYQRLEFLGDSVLDYIITIHLYNKYPGMSPGLLTDLRSASVNNDCYSLSAVKV
GLQKYILHASQKLHRQIESSVHNLDPLSMGSTFGWESENPLPKVLGDIIESLAGAILVDS
GYRKDIVFDSIRPLLEPLVSPDTLKLQPVRELHQLCQKENYVLKKSVVSCEKGVAAVTVE
VEANGIIHRESCTAANKAEAKKLASKAVLKSLKESMSAEPHPTPPLSLPKSKKRKDEN
NT seq
4317 nt
NT seq
+upstream
nt +downstream
nt
atgaccattctcattgaaacaactgctgatcattctcaggagaatcaggctgttgatatg
cctctggttcagactgctgagcaattgcctgctgattatcttccttttgctaggagttat
caactggatgccttggaaatggcgaagggacagaataccattgtttacttggaaactgga
tccggcaaaaccctgattgctatcatgcttctgcgcagctatgctcaccttttgcgcaag
ccctcgacttttcttgctgtttttctcgtccccactgtggtgctggtttcccaacaagct
gaggttgtgcaaatgcacaccgacttgaaagttggaaggtattggggagaaatgggagtg
gatttttggaatgctgctgactggaagaagcagcaggatgaatttgaggtgcttgtgatg
acaccacaaatattgcttaatgccttgaggcacagttttttaaagcttgagacgataagg
atcctaatatttgatgaatgccatcatgctagaaggagacacccttatgcttgcataatg
actgaattttatcaccatcacgtgaaagctaatgacttgcaacttcctaggatattaggg
ttgaccgcttcccttatcaacaataaaggttcaagtgacagaataaggtgctggaatgat
atccgggaacttgaaaacctaatgaactcaaaggtattcacttgcagtagtgagtctgcg
atagcagagtacattgaaatgtcaactccgaagcttaagacatatagacatgtggctttt
ccatgctcgttattcagcaaaatatctattcagttaaagaggttgcacgaaaagtttata
tgtgttattgaaaatgcaaacatggaggattctcaaaaggaaaatacaaggcaaagatta
tctaaactatgttcaacattttccttctgtttgactgaacttggactttggctagcacta
aaggcggcagattctttatcatctcaaggaagtgagatgcttatatggcaacaactggat
aagtctggtgagaggattataacagattttagcttggatgtatttaaagttctatctggc
tatattccttctgatcctaactggtctataagtgatgacatggaagctaatgttgggaat
ggttatctgtcaacgaaagttatctgcctctttgattctcttcttcaacgcaggggctta
atagatcttagatgcatagtctttgtagaaagggttataacggccattgcactttgccgc
ctattgaatgttgtgcttcctagcctaagtggatggagaacagaatatttggcaggcagc
aatactcgacttcagttacagagtaggaaggcccaaaacataattgttgaagaatttcgc
aagggcaaggtgaacataattgttgcaacatcaattcttgaagaagggttggatgtacag
agctgcaatctggtggtacgatttgacccgccatctacagtacgcagttttattcagtct
cgaggtcgggctaggatgcacaactcagaatttttgatactggtaaaaagtggcgacaat
tcttctatcaccagagtagacaactacctttctagtggccaggttatgaggcaggaatca
ttgaggcatgctgcactgccttgccagccacttgatactgaaatctataatgaagtgttc
taccgggttgactcaacaggagctgttgtgacactgagctctagcgtgtctcttatttac
ttctattgctctcgcctaccctccgacgggtactttaagccccttccgagatgtaatatt
gacaaggagctgcagaaatgcaccttatatttttccaaaagttgtccactgcctagtatc
actgttcatggaaatttcaaaacactgaaacaacttgcgtgcctagaagcatgcaaaaag
ttgcatatgttgggagcattaacggacaatcttgtaccagatatggtggaagaagaagat
gctgaagaactgggtcatctgaattacgttgatgaacatgatatctatgttccagcagaa
cttgttggtcaaggtcttaacagtggtgcaaagagatactactgttatctgctagagttg
gaaagaaattttacctatgatattgaaattgataatctgatgcttgctgctcgtaatgag
cttaaatttgatgaaggcaacaacttagcctttgaactggaagttgaaaggggcattgta
atagttcgcatcaaatatgctactcctataagtctcacttctgaagaggttctcaagtgc
aagaagttccaagtaaatatattaagtgttctccataataaaaattataataaattgaag
gagagacttgatgttattcacccaccggaagaccttgatgtttatgactatctcttactc
ccaactactggctcgcagcagtcactgtatattgactggagatctgttgattctgttctg
tttagaagtgaaaatatcatccatgatcatgcaaggtgccctttgcctaaagaccaatat
aatattgtgtacacaagaagcggtctggtctgtcggtgtgttgtagagaattctttagtc
tgcacacctcacaatggttatatatactgcattctgggcacattatatggtgtgaatgga
agttcagtgtttaacttaagagacggagaatcttcaacttacaaagactactatgaacaa
aggcatggtatcaacttgcaatttgagcgggaacattttcttaagggaagacatattttt
acggtacagaatcaccttcacaagtatacaaagcaaaaggaaccagaacaaagcactgcg
tatgtggaattgcctcctgaactttgttcaataatcatgtcacctatatctgttggcacc
tgttattcctattcatttgcctcagcaattatgcatcgaatagagtctttgctcattgct
agcagcttaaaaaagatgcacgcagattattgtattcaaaatgctattgcaacacctaag
attccaactatgaaggtgctggaagctattactactaagaaatgccaggagaaatttaat
ctagagtcactggagactcttggggactcatttctgaaatacgctgcttgtcagcaggtg
tttaaaatgcaccaagataaacatgaaggcattcttagtataaaaaagaataaaattata
tctaatgctaacctatgcaagctaggctgcaggcgtaaacttcagggtttaatacgtaat
gaaccctttgatcccaagatgtggatcattcctggtgatcagatggaggcttttcatgaa
gttcaactatctactactacaaaagtattcactaaaggaatacgaaaaataaaaagtaaa
gttgtagctgatgcagttgaggcattaattggcgtgttcctcagctgtgacggtgaacct
gcagctttgtcaatcatgacttggcttggtattgaggttgatttttttaacataccatat
aagaggagcttttcagcacatccagaagagctaattaacattagttatctcgagtctata
cttaattactcatttactgatgcttcactacttgttgaagcattaacacatggttctttc
atgctaccccaagttccccagtgttaccagcgtcttgagtttcttggagattccgtactg
gattacatcataacaatccatctgtacaacaaatatccgggaatgtcacctggattgcta
actgatctgagatcagcttctgttaacaatgattgttattctttatctgcggttaaggtt
ggattgcagaaatatatactccatgcctcgcaaaaacttcaccggcaaatagagtcctct
gttcataatttagatccattatcaatgggatcaacgtttggatgggagtctgagaaccct
ctgcctaaggttcttggagacataatagaatctctagcaggagcaatcttagttgattca
ggttaccgaaaagatattgtattcgacagcatacgaccgcttttggaacccttggtatct
cccgacacccttaagcttcaaccagtgagagaattgcatcagttgtgccaaaaggagaac
tacgtgctgaaaaagtctgttgtgtcatgtgaaaagggtgtggccgctgttacagtcgaa
gttgaagccaatggcatcatacacagagagtcatgcactgctgctaataaagcagaagcc
aagaaacttgcttccaaagctgttttgaagtcgttaaaagagagcatgtcggctgaacct
caccctactcctcctctgtcgcttcccaagagtaaaaagagaaaggacgaaaactga
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