Daucus carota (carrot): 108201843
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Entry
108201843 CDS
T05350
Name
(RefSeq) nuclear pore complex protein NUP54
KO
K14308
nuclear pore complex protein Nup54
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03013
Nucleocytoplasmic transport
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108201843
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108201843
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
108201843
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Nup54
Motif
Other DBs
NCBI-GeneID:
108201843
NCBI-ProteinID:
XP_017225649
UniProt:
A0AAF0XYQ0
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Position
9:complement(45557495..45564393)
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AA seq
385 aa
AA seq
DB search
MFGTPANSSPAFGTPSSTPAFGTPNPFATPAASTPQLTPNPFATPNPNPNPFASSSTPAF
GTPSSSAFGTSLFSTPFSQQPPQSNPNSAFGFSSSPFPQQQQQQQQQPQPSPFAAPSPFA
ISQLTTQMAPVAPLPFSLADRDIQGILEAYKDDPGNTKYAFKHLLFSVTDPQYRIKPAGV
SDIMWAEAMGKLEGMESSKRERLWPQLVQGFKDLSERLKLQDEILVSDADRLRITQSNVK
VLQRHFQADTIPRIERMRQKEHGIQRRLLRVMRMVEALEGKGFRLPLMKGEVELAEKLAA
ITRQLKGSGAELSRRVQNLLTLARVQANDLGGSVFLPGSTKIHEQSLASMQEVLQQQTEA
ISRMGGVLKRDLRDMEIMMAEETDA
NT seq
1158 nt
NT seq
+upstream
nt +downstream
nt
atgttcggaacaccggccaactcgagccccgccttcggcactccctcatccacccccgca
ttcggcacccctaaccccttcgccacacccgccgcctccactccccaactcacacccaac
cccttcgccacccctaaccctaaccctaaccccttcgcttcttcctccactcccgctttc
ggaaccccttcttcatccgctttcggcacttctctcttctctacccccttctcccaacaa
ccacctcaatccaatcccaattcggcttttggattctcctcctctccatttcctcaacag
cagcagcagcagcagcagcagcctcagccgtctcctttcgccgctccttctccctttgcc
atctctcaactcaccactcaaatggctcctgtcgctcctctccctttctctctcgccgat
cgcgacattcaggggattttagaagcttacaaggatgacccaggaaacaccaagtatgca
ttcaagcatttattgttcagcgtaactgatccacaatacagaataaagcctgctggtgta
tcggatattatgtgggcagaggcgatggggaagctagaaggtatggagagttcaaaacgg
gagcgcctctggccacaacttgttcaaggttttaaagatctttccgagcgtctcaagctt
caagatgaaattctagtctcggacgctgatagattacgtataacccagagcaatgtgaaa
gtgcttcaaaggcactttcaagccgatactattcctcgaattgaaagaatgagacagaaa
gagcatggtattcaaagacgtcttttaagggttatgagaatggtagaagctctggaagga
aagggatttcgactaccattgatgaaaggtgaagtggaattagctgagaagctggctgct
ataactcgacagttgaaaggatctggagcagaactttctcggagggtccaaaatcttctt
actctagctcgtgttcaagcaaatgatcttggcggttctgtttttctaccaggatcaact
aaaattcatgaacagtctcttgctagtatgcaggaggtgttgcaacagcagacagaggcc
atttctaggatgggaggtgtgttgaagagagacctccgagacatggaaattatgatggca
gaagagacagatgcttga
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