Daucus carota (carrot): 108202553
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Entry
108202553 CDS
T05350
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH7, chloroplastic isoform X1
KO
K18995
ATP-dependent RNA helicase DHX29 [EC:
5.6.2.6
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03012 Translation factors [BR:
dcr03012
]
108202553
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108202553
Translation factors [BR:
dcr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108202553
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
UBA_DHX29
Helicase_C
DEAD
HA2_C
HA2_N
DSRM_DHX29
DND1_DSRM
nSTAND3
ATPase
AAA_22
AAA_19
dsrm
YoaP
Cas3-like_C_2
HTH_MCM7
Motif
Other DBs
NCBI-GeneID:
108202553
NCBI-ProteinID:
XP_017226494
LinkDB
All DBs
Position
9:4563129..4586848
Genome browser
AA seq
1446 aa
AA seq
DB search
MAPKKKHQQKHKPSSSSQSSSSSGPKLQISAENETRLRRLLLNSGRSTPSPADDSLSKAQ
KAKKLRTVYEKLSCEGFTDQQIELALSALKENATFEAALDWLCLNLDGNELPSKFSSGTS
LHANEGSVGILSIAQEDWKPSVESSLVTEDEMSKVSIQVKARQETDTLDSLQPSQADWIR
QYVQQQEEARCLEFLLNKLQDEFDTWEAEEMNKVSADQVLKSRSDPDSIVKEYHDARLEA
LNAKQRGDRKGQEDAGKIIRKLKQEISALGLSDDLLSSVYETTYNHGSEQTSDLPPCEHL
NDNNPSNAEDVVESKVENVDESCSPKDISEESVSTDKGAVEDESGDIELGNLLFEDSLPN
EVIPSEVMKLQKKEKIRELSSGKNLEKLEGIWKKGDPQKIPKAILQQFCQKLGWEPPKYN
KLPGKGQGPKYSVNVLRKASGRGKSRKAGGLVSFQLPTENDTFKTAEDAQNAVAAFALFS
LFPDLPIHVTITEPYASFVLEWIEGESSEIVDDKAADRRAGFVDSLLNIDITDAVPPAEH
MNSPLKEMQQKPEEGNGNSVSVTADPKSRRFNQIEAESSYLTQKQENKKKTDKYKVMLES
RAKLPIAELKDDILRLLKENNVLVVCGETGCGKTTQVPQFILDDVIEAGRGGHCNIICTQ
PRRIAAISVAERVADERCESSPGSNDSLVGYQVRLDSARNERTKLLFCTTGILLRKFAGD
KDMSDLTHVIVDEVHERSLLGDFLLIVLKKLIEKQSKDRVHKLKVILMSATVDSEMFSRY
FGNCPVITAEGRTHPVSTCFLEDIYESLNYRLSSDSPASIRNDTSKQRGAPVTNHRGKKN
LVLSGWGDESLLYEDSINPYYEPTYYGNYSEQTRQNLKRLNEDVIDYDLLEDMVCHIDET
SPEGAILVFLPGVSEIHLLYDKLAASYRFRGPSTEWLLPLHSSIASADQRKVFSRPPSNI
RKVIIATNIAETSITIDDVVYVVDCGKHKENRYNPQQKLTSMVEDWISQANARQRRGRAG
RVKPGSCFCMYTRHRYDHLMRPFQQPEMLRMPLVELCLQIKLLSLGNIRLFLSEALEPPK
EDAITSAISLLYEVGALEGDEELTPLGYHLAKLPVDVLIGKMMLYGGIFGCLSPILSISA
FLSYKSPFVYPKDERQTVERAKLALLTDKSGVASDSVNNNKQSDHLVMMVAYRKWEKILR
ESGGKAAQRFCSSYFLSSSVMYMIRDMRIQFGTLLADIGLVNLPKTYQINGTRKDVLDSW
FSDMSEPFNINSNHFSVVRAILCAGLYPNVAAMEEGIAGTVLGNLKHSVASPHGRPVWYD
GKREVHIHPSSINSNSKGLQYPFLVFLEKVETNRVFLRDTTIISPYSILLFGGSINLQHQ
TGLVIIDGWLKLKAPAQTAVLFKELRATLHSILKELIGKPQTRAIADNEVMRSIIHLLLE
EDKPLK
NT seq
4341 nt
NT seq
+upstream
nt +downstream
nt
atggcaccaaagaagaagcaccagcagaagcacaagccatcatcatcatcacagtcatca
tcttcctcaggtcccaaacttcaaatctccgccgagaacgagactcgtctccggcgactc
ctcctcaattccggccgctcgacgccttctccggccgacgactcgctctccaaagctcag
aaggcgaagaagcttcgaacagtttacgagaagctgtcgtgcgaaggcttcactgatcag
cagattgaactagctctctctgctcttaaggagaatgctacatttgaggctgctttggat
tggctatgcttgaatttagatgggaatgagcttccttccaaattttccagtggcacttca
ttacatgctaatgaaggttctgttggcatactatcgattgcacaagaagactggaaacct
tctgtggaatcatcacttgttactgaagatgaaatgtctaaggtttctattcaagttaag
gcccggcaggagactgacactttggattcattgcaaccgtctcaagcagattggatacgt
caatatgttcagcaacaagaggaggcgcgctgcttagagttcttattgaacaaactgcag
gatgaatttgacacttgggaagctgaggagatgaacaaggtttccgcggatcaggtttta
aaatcaaggtctgatcccgattctattgtcaaagaatatcatgatgcacgattagaggct
ttaaatgccaaacagagaggagacagaaaaggtcaggaagacgcagggaaaattattcgc
aagctcaagcaagagatatctgctttaggactatctgatgacctcttgtcctctgtgtat
gaaactacttacaaccacgggtctgaacaaactagcgatttaccgccttgcgagcatctt
aatgataacaatccatctaacgcagaagatgtggtggagtcaaaagttgagaatgttgac
gagagctgtagcccaaaagatatttctgaggaaagtgttagtactgataaaggtgctgta
gaagatgaatcaggagatatagagctaggaaatttgctctttgaagactccttacccaac
gaagtgattccttcagaagtgatgaaactccaaaagaaagagaagataagagaattatcc
tctgggaagaacttggagaaattagagggcatctggaaaaagggggacccacaaaagatt
cctaaggctattctgcaacaattttgtcaaaaattagggtgggaaccacctaagtacaac
aaattgcctggtaaaggccagggacccaaatactctgtcaatgtactacgcaaggctagt
ggcagaggtaagagcagaaaagctggaggacttgtttcatttcaactacctactgaaaat
gatacttttaaaactgctgaggatgcacagaatgcagttgcagcgttcgctctttttagc
ctgtttcctgacctccctattcatgtaacaatcacggagccatatgcttcatttgttcta
gagtggattgaaggggaatcctcagaaattgtagatgacaaagcagcagaccgaagggcc
ggatttgtagattcattgttgaacatcgacataactgatgctgttccacctgctgaacat
atgaatagtcctcttaaggaaatgcaacaaaaacctgaagaaggaaatggaaattcagtt
tctgttactgctgatccaaagtccagaagattcaatcaaatagaggcagagagttcttat
ctgacacagaaacaagagaacaaaaagaaaacagacaaatacaaggtgatgttagaatcc
agagctaaacttcctattgctgagctaaaagatgatatattgcgcctgttgaaggagaac
aatgttcttgttgtttgtggggagacgggttgtggaaagactacacaggttccacaattt
atcttagatgacgtgatcgaagcaggacgaggtggacattgtaatattatatgcacacag
ccaaggagaatagcggccatatctgttgctgaacgagttgccgatgagcgatgcgaatca
tctcctggttcaaatgattctttagtaggctaccaagttcgtttggatagtgctaggaat
gagaggacaaagcttcttttctgtactactggcattcttctgagaaagttcgctggggac
aaagatatgtctgatcttacccatgtcatagttgatgaagtacatgaacgatcactcctg
ggtgactttttactgattgttctaaagaagctaattgagaagcaatcaaaggacagggta
cacaaattgaaagtaattcttatgtctgcaacagttgattcagaaatgttctcacgatat
tttggcaactgtccagttattactgctgaaggtcggacacatcccgtgtctacttgcttt
ttagaggatatatatgaaagtcttaactaccgtctctcctctgattctccagcttccata
agaaatgatacatccaaacagaggggtgctcctgttactaaccacagagggaaaaaaaat
ctggtcttatctggatggggtgacgagtctttgctctacgaagattctattaatccatat
tatgaaccaacatattatgggaactacagtgagcaaactaggcagaatttgaaaagatta
aatgaagatgttattgattatgatcttcttgaagatatggtatgccacattgatgaaact
tctcctgaaggtgccatactcgtatttttaccgggagtttcagaaattcatttgttatat
gataagctggctgcttcttaccgctttcgcggtccatcaacagagtggcttcttccgttg
cattcgtctatagcatctgccgatcaaagaaaggtgttttcacgacctccgagtaacatc
cgtaaggttattatcgcaacaaatattgcagagactagtataacaattgatgatgtggta
tatgtggttgactgtggcaagcacaaggaaaatcgttataatccacagcagaaattgact
agcatggttgaggattggatatctcaagcaaatgcaagacagcgacgaggaagagctgga
cgtgtgaaacccggaagctgcttttgcatgtatacacgtcacagatatgatcatctcatg
cgcccgtttcagcaacctgagatgctacggatgcctttggttgagttgtgtttacagatt
aaattactctctcttggtaacataaggttgtttttgtcagaggccttggaacctccaaag
gaagatgctatcacctcggccatttctttgttgtatgaggttggtgctcttgaaggagat
gaagaattaacacctcttgggtatcatttggctaaactgccagtggatgttttaattgga
aagatgatgttgtatggagggatatttggttgcctatctccaattctttccatttcagca
tttctgagctataaatcgccgtttgtatatccaaaagacgagaggcaaactgttgagaga
gcaaagttggctcttttgacagataaatcaggtgttgcaagtgattcagttaataataat
aagcaatctgaccatttggtgatgatggttgcatatagaaaatgggaaaagattctgcga
gagagtggaggcaaagctgcgcaaaggttttgtagttcatacttcttaagcagttcagta
atgtacatgataagagacatgcgaattcagtttggaaccttgctggcagatattggtctt
gtcaatcttccgaaaacttaccagataaatgggacaaggaaagatgtgcttgacagttgg
ttttctgatatgtcggaaccctttaatattaattctaatcatttttcagttgtgagggcc
atactgtgcgcaggtttgtatcccaatgttgctgccatggaagaaggcattgctgggaca
gtgttggggaatcttaaacactctgttgcttcaccacatggtagacctgtctggtatgat
ggaaagagagaagtgcatatacacccttcatctatcaatagtaactcaaagggtttgcag
taccccttccttgtcttccttgaaaaggtcgagactaatagggtgtttttgagagatact
accatcatctcgccttactctattttgctttttggtggttccataaatttacaacaccag
actgggctggtcattatagatgggtggctaaaattgaaggcgcctgcacagactgctgtt
ctttttaaagaactccgtgcaacactacattccattttgaaagagctaattggaaaacca
cagactagagccattgctgacaatgaggttatgaggtccataattcatcttctattagaa
gaagacaaacccctaaagtga
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