Daucus carota (carrot): 108202562
Help
Entry
108202562 CDS
T05350
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH5, mitochondrial
KO
K14442
ATP-dependent RNA helicase DHX36 [EC:
5.6.2.6
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108202562
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108202562
03012 Translation factors [BR:
dcr03012
]
108202562
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108202562
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
108202562
Translation factors [BR:
dcr03012
]
Eukaryotic type
Initiation factors
Initiation associated factors
108202562
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
dsrm
HA2_N
AAA_22
nSTAND3
AAA_19
ABC_tran
ATPase
Dicer_dimer
NPHP3_N
AAA_11
ATPase_2
PhoH
AAA_23
Motif
Other DBs
NCBI-GeneID:
108202562
NCBI-ProteinID:
XP_017226509
UniProt:
A0AAF0XZ51
LinkDB
All DBs
Position
9:32918086..32935807
Genome browser
AA seq
1184 aa
AA seq
DB search
MQATPRQLLSSNSLPKTLEIFAQSLQMKDKSRPPPSAAVYVPPHQRLRSVITAAAPSPNL
SPVDSNSSTIKKSSDPYPYLFDLHEVQEKKQKQEEMNSQLGSKNVELSTQSGAFTSDNID
AWKWKLMTLIRDKDKQELVSREKKDRRDFEQIAALASQMGLHSCLYAKVVVVSKTPLPNY
RFDLDDKRPQREVMLPPGLERRIDVHLKEYLSLKTKCAEGFRHVFFRSNSDVSISSDEGV
FEQPEPLLSSKAATERIMWRRSMQLYTEQKSWQESAIEGQKMLEFRKGLPAYREKNAILN
SISQNQVVVISGETGCGKTTQIPQFILESEIESVRGALCSIICTQPRRISAISVSERVAA
ERGEQLGESVGYKVRLEGVKGRDTRLLFCTTGILLRRLLVDRNLKGVTHVIVDEIHERGI
NEDFLLIVLKDMLHHRPELRLILMSATLDAELFSSYFGGAPVIHIPGFTYPVQAHFLENI
LEMTGYRLTPQNQIDDYGLEKTWRINKQTTRKRKSQIASAVEDSLRVADFKEYSTGTRES
LSCWNPDYLNFNLIEHLLCNICENEKPGAVLVFMTGWEDISSLKDKLQLHPTLGDTTRVL
LLACHGSMATLDQKLIFKKPEGEVRKIVLATNIAETSITIDDVVFVIDCGKAKESSYDAL
NNTPCLLPCWISKASAQQRRGRAGRVQPGECYHLYPRCVFDAFADYQLPEILRTPLQSLC
LQIKSLDVGSITDFLSRALQSPESLAVQNAIEYLKIIGALDENKNLTVLGRYLAKLPLEP
KLGKMLILGSIFNCLDPVLTIVAGLSVRDPFLAPVDKKDQAEAAKAQFSRAYSDHLALVR
AYEGWKAAEIDLAEYRYCWNNFLSAQSMKTIDSLREEFYSLLRETGLADSNINMHNVWSY
DENLLKAVICYGLYPGICSIVHNEKSFSLKSMEDGQVNLYSNSVNARASKIPFPWLVFNE
KIKVNSVFLRDSTAISDSALLLFGGSISRGNIDGHLKMMGGYLEFFMEPMTAEMYQTLRS
ELEELIQNKLLNPRMDLHAHHALLSAMRLLLAEDQCGGRFVFNRAVTQNPSKPMVTVVEP
QSMVSRTESGPGGDNSKSQLQTLLTRAGHSAPIYKSNQLDNNQFQSTVEFNGMQIMGRPC
NTKKQAEKDAAAEALQLLLGKKQMGREYIDQMSMMLKKSKKDHN
NT seq
3555 nt
NT seq
+upstream
nt +downstream
nt
atgcaagccactcctcgccaattactctcctctaattcactccccaaaaccctagaaatt
ttcgctcaatcactacaaatgaaggacaagtcacgaccaccgcccagcgccgccgtatac
gtgccgccgcaccagaggctccgctccgttatcaccgctgcggcgccgtcgccgaatttg
tcgccggttgactccaattcgagcacgattaagaagtcaagtgatccatacccgtacttg
tttgatttgcatgaggttcaggagaagaagcagaagcaggaggagatgaattcgcagctc
ggttcgaaaaatgtcgaattatctactcaatcgggtgctttcacttcggataatattgat
gcttggaaatggaaattaatgactcttatacgagacaaggataagcaagagttagtttca
cgggagaagaaggaccgtcgtgattttgagcaaatagcagctttggcaagccaaatgggt
ctgcacagctgtttatatgctaaagtagttgttgtcagcaagaccccattgcctaattat
cgatttgatctcgacgataagcgtccacagcgagaggtgatgctgcctcctgggttagag
aggagaattgatgtgcacctgaaagagtatctatcactgaaaactaaatgtgcagaaggt
tttcggcatgtatttttcaggtcaaacagtgatgttagtatctccagtgatgagggtgtc
tttgagcaaccagagccactattatctagtaaagctgcaacagagagaattatgtggagg
aggagtatgcagctgtacaccgagcaaaaatcttggcaggaatctgcgatagaaggtcaa
aagatgttggaatttcggaaaggtctccctgcttatagagagaagaacgcaatactaaat
tccatatcacagaatcaggtggttgtcatctctggtgaaactggttgtgggaagactaca
caaattccccaatttattttggaatctgagattgagtctgtacgtggagccttgtgtagt
atcatatgcactcagcctagacgaatatccgctatatccgtctctgaaagagttgctgct
gagaggggggagcagttgggtgaatcagttggatataaagttcggttggagggtgttaaa
ggtagggatacccgtctcctattttgcacaactggcatcctgttaagaagattacttgta
gatagaaatttgaagggtgtaacacatgtgattgttgatgagattcatgaacgtggaata
aatgaagattttctgctcattgtccttaaagatatgctacatcatcggcctgaactaagg
ttaattttgatgagtgcaaccttagatgcggagcttttctcgtcttactttggtggggct
cctgttattcatattccgggtttcacgtatcctgtgcaagctcattttctggaaaatatt
ttggaaatgactggatacagattaactccacagaaccaaattgacgattatgggctagag
aaaacatggagaataaacaaacaaactacaagaaagagaaagagccaaattgcttctgct
gtcgaggattcactgagagttgccgactttaaggaatatagcacaggaacaagggagtcc
ttgtcatgctggaatcctgattatcttaatttcaatctcattgaacatcttttatgcaat
atttgtgagaatgaaaaacctggtgctgtcttagttttcatgactggatgggaagacatc
agttccctaaaggataagctccaacttcatccaacgctgggagatacaacccgtgttcta
ttgctggcgtgccacggttctatggctaccctggatcagaaattaatatttaagaagccg
gaaggtgaagtgaggaaaatagtactagctactaatattgctgagactagtattactata
gacgatgtggtttttgttattgactgtggaaaagccaaagagtcgtcatatgatgcatta
aataacacaccttgtttgcttccatgctggatttcgaaggcttctgctcaacagcgaaga
ggaagagctggccgtgtgcaacctggtgaatgttatcatctctaccccagatgcgttttt
gacgcttttgctgattaccagttgccagagattttgagaacgccgttgcagtccctctgt
ctgcaaataaaaagtttagatgttggaagtattactgattttctatctagggctttgcag
tcaccggagtcactagcggttcaaaatgccattgaatatttgaagatcatcggagcttta
gatgagaataaaaacttgacagtcttggggcgctatcttgcaaagcttccactggaacca
aaacttgggaagatgcttatattgggctcaatattcaattgcttggacccagttctaact
attgttgctggtcttagcgtcagagacccattcttggcaccggtggataagaaggatcaa
gcagaagcagcaaaagcacagttctctcgtgcttacagtgaccacctagctctggtccgt
gcttatgaagggtggaaagctgccgagatagatctagcagaatacagatattgttggaat
aactttctttctgcacaatcaatgaaaactattgattctctacgagaggaattttattct
ttgctaagagaaactgggcttgctgacagcaacataaacatgcacaatgtgtggagctat
gacgagaatctcctgaaggcagttatttgctatggtttgtatcctggaatatgctctatc
gtgcacaatgagaagtcattttcattgaaatctatggaggacggtcaagttaatttgtat
tctaactcagtaaatgcccgggcctctaagattccatttccgtggctggtttttaatgag
aaaatcaaagtgaactcagtttttcttcgagattcaactgccatatcagattctgcactt
cttttatttggaggaagcatttctagagggaatattgatggtcatttaaagatgatgggg
ggatatttagagttctttatggaaccgatgacagcagaaatgtatcaaaccttaaggagt
gagcttgaagagttaattcaaaacaaattgctgaaccccaggatggacttgcatgcacac
catgctcttctatcggcaatgcgtttgcttcttgctgaagatcagtgtggtggaagattt
gtttttaaccgtgcagtgacacaaaacccctctaaaccaatggttacagtggtggaacca
caatctatggtttctagaacagagagtggacctgggggtgataattcaaaaagtcagctg
caaacgttgcttactcgggctggacattctgcccccatatacaaatcaaatcaactggac
aacaaccagttccagtccactgtagaatttaatggaatgcagataatggggaggccttgc
aacactaaaaaacaagcagaaaaagatgcggctgctgaggctttgcaattgttattgggg
aaaaaacagatggggcgtgaatacattgaccagatgtcaatgatgctcaaaaagagcaag
aaggatcataattag
DBGET
integrated database retrieval system
