Daucus carota (carrot): 108202574
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Entry
108202574 CDS
T05350
Name
(RefSeq) serine/arginine-rich splicing factor SR30 isoform X1
KO
K12890
serine/arginine-rich splicing factor 1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108202574
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108202574
Spliceosome [BR:
dcr03041
]
Common components
Common spliceosomal components
SR proteins
108202574
BRITE hierarchy
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Paralog
Gene cluster
GFIT
Motif
Pfam:
RRM_1
RRM_occluded
RRM_7
Nup35_RRM_2
RRM_5
Motif
Other DBs
NCBI-GeneID:
108202574
NCBI-ProteinID:
XP_017226524
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All DBs
Position
9:6269708..6277451
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AA seq
318 aa
AA seq
DB search
MFLTFEPHTRIPKLSQSSPAHTFRKMSGRLSRTIYVGNLPGDIREREVEDLFYKYGHIVE
IDLKIPPRPPGYAFVEFEDARDAEDAIEGRDGYKFDGQRLRVEFAHGGRGSSSGDRYSSY
SSGGSRGGVSRRSEYRVLVTGLPSSASWQDLKDHMRRAGDVCFSQVYPERGHGRGVSGVV
DYTNYDDMKYAIRKLDDSLFKNQFSKAYIRVEEYDERRGYSRSPSRSPYSRSRSRSRSYS
SRSRSSESPRAKHPRRARSRTRSRSRSIRSESSRSISRSRSRSRSPAYASRRRRSVSRSP
SRDRRISRSRRSPSVLSD
NT seq
957 nt
NT seq
+upstream
nt +downstream
nt
atgttccttacgtttgagcctcatacaagaattcccaaactatcacaaagctctcctgca
cacactttcaggaagatgagtggaagattaagtcgaaccatctatgttggcaatctacct
ggtgatattcgggagagagaagtagaagatttgttctacaagtatgggcacatagtggaa
attgatctgaaaatcccacccagaccgcctggttatgcttttgttgagtttgaagatgcc
cgtgatgctgaagatgctattgaaggtcgggatggctacaaatttgacgggcaacggcta
agggttgaatttgcacatggtggccgaggatcatcatcaggggatcgctatagtagttac
agtagtggtgggagccgtggtggggtttctcgaaggtctgagtatcgcgttttggtcact
ggattaccttcctctgcctcgtggcaagacttgaaggatcacatgcgtcgtgctggggat
gtttgcttctctcaagtttacccagaacgtggtcatggacgcggtgtcagcggagttgta
gactatacaaactatgatgacatgaaatatgcgatcaggaaactcgacgactctctgttt
aaaaatcaattttcgaaggcctacatacgggttgaggaatatgatgagagacgtggttac
tctaggagtcctagtcggagtccgtattcaagaagcagaagccggagccgcagttatagc
agccggagcagaagcagcgagtctccaagggcaaaacatcctcgtcgtgctcgatccagg
actcggtctcgttcaaggtctattcgttctgaatcatctcgctcaatatctcggtctcgc
tcaagatctagatctccagcctatgcttctcgtcgccgcagatcggttagcagaagtcca
agcagggatagacgcatttcccgatcccgtcgctcaccttcggtgctatctgattga
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integrated database retrieval system
