Daucus carota (carrot): 108202611
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Entry
108202611 CDS
T05350
Name
(RefSeq) SWI/SNF complex subunit SWI3D
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108202611
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108202611
03036 Chromosome and associated proteins [BR:
dcr03036
]
108202611
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108202611
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108202611
PBAF complex
108202611
GBAF(ncBAF) complex
108202611
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
ZZ
Myb_DNA-bind_6
Motif
Other DBs
NCBI-GeneID:
108202611
NCBI-ProteinID:
XP_017226576
UniProt:
A0AAF0XWM2
LinkDB
All DBs
Position
9:complement(826323..831875)
Genome browser
AA seq
922 aa
AA seq
DB search
MDDKHKLAETLAPAVDTPTKLSDPPPEHTPPSRRRGGAQKRKHQSLSNLSGHQTTSSKRQ
AREKPPVAPLYQIHNGPLTRARLQPYFEAPEVKSDVDLANARILESRAKKAEEELAAARE
DYEALEAKIEAECKKLMSRNVGDHVVPVHCGWFSWTKIHTLEERSLPSFFSGKSENRTPE
LYMEIRNGIMNKFHANPNARIELKDLSEIVVGDSDAKQEILEFLDYWGLINYHPFPETNS
SILNIDAEEAEKTDSLLEKLYQFDKEESCALAVSKSNVATPTLASRLFPESSIADELMTA
EGPSVEYHCNSCSADCSRKRYHCQKQADYDLCTECFTSGKFDSDMSPTDFILMEPGDAAG
ASSGKWTDQETLLLLEALELYKENWNEIAEHVATKTKAQCILHFVQMPIEDPFMDCDDQP
DVSLKDDVGPLSATDDIQDSKDVNGAENKDKNISSSPSSTSIEKSKPVSETQIIQEQGEN
SILRALTEAFDVVDSSHSPKDKLSFSEAGNPVMALAAFLVRLVEPNVVTASTRTSLKSVS
GTASGTQLAARHCFLLEDPTDEGKKTAEPLRAVAEAVGPEGQNNINQVSLKEDEKSNLVS
DNSDLSSVHDKDKKENSLRDAEEQLVSPNGECLKDSQALKGPDVVNETVEPGPVKRSDIE
KFPRKAEASNAEELGGLNSKVELPPTSLEKAKDATSLSLDAPKGEMLNSESTEALKDEKL
SQSPTEQKDQGNLVTSDSIIENGAKDVREAADSKNENKDSADAKGDLCTKKVRQAAITAV
SAAAVKAKLLADQEEDQIRLLATLLVEKQLHKLETKLAFFTEMDGLVMRVRELLERSKQR
LYQERAQIIAVRLGVSNSSSRPMSQSLPVNRAAMHFANSALRPPGNMTFQRPPIARPMMA
SNPMAGNSVQSNQGNHSSSGMN
NT seq
2769 nt
NT seq
+upstream
nt +downstream
nt
atggacgacaagcacaaactcgccgaaaccctagctcccgccgtcgacactccgacgaag
ctctccgatccaccgccggaacacacgccgccgtctcgacgtcgcggtggcgctcagaaa
cgcaagcatcagagcctaagtaacctctctggccaccaaacgacgtcgtcgaagcggcaa
gctcgcgagaagcctccggtggcgccgttataccagatccacaacggtccgttgacgcgc
gcacggctgcagccgtatttcgaagctccggaggtgaagagtgatgtcgatttggcgaat
gcgaggattttggagtcgagagcgaagaaagcggaggaggagctggctgcggcgagagag
gattacgaggccttggaggcgaagattgaggcggagtgtaagaagttaatgtcgaggaat
gttggtgatcatgtcgtgcctgtgcactgcggttggttttcttggacaaaaatacataca
ttggaggagcgatcattgccttcgttctttagtgggaaatcagagaatcggactcctgaa
ttgtacatggaaattcgtaatgggatcatgaataaatttcatgcaaatcctaatgccaga
attgaattgaaagatctatctgaaatcgtagttggcgactcagatgcaaagcaagagatt
ttggagtttcttgactattggggtctaattaattaccatccatttccggagaccaattct
tccattttaaatattgatgctgaagaagcagagaaaacagattctttgcttgaaaaactt
taccaatttgacaaggaagaatcatgtgcactagccgtttctaaaagtaatgtggcaaca
ccaactcttgcatctcgattgtttcctgagtcttctattgctgatgagttgatgacagct
gagggtccatccgttgaatatcattgcaattcttgctcagctgactgctctcgcaagcgc
tatcattgccagaagcaggcagactatgacttatgtactgaatgcttcaccagtggcaag
tttgactccgatatgtctcctactgatttcatcttaatggagcctggtgatgctgctggt
gccagtagcggaaaatggacagatcaagagacgcttctcctccttgaagcactagaactc
tacaaagaaaactggaatgaaattgctgagcatgttgctactaaaactaaagctcagtgt
atcttgcactttgtgcagatgccaatcgaggaccctttcatggattgtgatgatcagcct
gacgtgagcctcaaagacgatgtgggcccactttcagccactgacgatattcaggattcc
aaagatgtgaatggagcagaaaataaagataaaaacattagcagttccccctcgtccact
tcaatagaaaaatcaaagccagtcagtgaaacacaaattattcaggaacaaggtgaaaac
agcatcttaagggcacttacagaagcatttgacgttgttgactcttctcattcacctaaa
gataaactctcattttctgaagctggtaatcctgtcatggctttggcagcatttctcgta
agattggtggaacctaatgttgttactgcttctactcgtacttccctgaaatctgtatct
ggcactgcctctggtacgcaactggctgcaaggcactgctttctgttggaagatccgacg
gatgagggtaaaaaaacagccgaaccactacgggctgtcgctgaagcagttgggccagaa
ggtcaaaataatattaaccaggtgagcttgaaagaagatgaaaagtcaaatttagtctct
gataacagtgatttatcaagtgtccatgataaagataaaaaggagaattctttaagagat
gcagaagaacaattagtttctccaaatggcgaatgtttaaaggattcccaagctttgaaa
ggaccagatgtagtaaatgaaacagtcgaacctggccctgtaaaaaggtctgatattgag
aaatttcccaggaaagcggaagcaagtaatgcagaagagttaggtggcttgaactccaag
gttgagcttcctcctacttctcttgaaaaggccaaagatgctacgtctctatcattagat
gctccaaaaggtgagatgttaaactctgagtctacggaggctttaaaggatgagaagcta
tctcagtcccccactgaacagaaagatcaggggaatctagtaacatcagactctatcatc
gaaaatggagctaaagatgtaagagaagcagcagacagcaaaaatgaaaacaaagactct
gccgatgccaaaggtgatctctgcaccaagaaggtaagacaagctgccattactgcagtc
tcggctgcagctgtgaaggcaaaactacttgctgatcaggaggaagaccaaattcggctg
cttgctaccctattggttgagaagcagttgcacaagttagaaactaagttggctttcttt
acggagatggatggtttggtaatgagggtgagggaactactggaaaggtcaaagcagaga
ctttaccaggagcgggcacagataattgctgttcgtcttggtgtatccaactcatcttct
aggcctatgtctcagtctttacctgtcaatagggctgcaatgcattttgcaaactcagca
ctaagacctccggggaacatgaccttccaacgaccaccgattgcaagaccaatgatggca
tccaatcctatggccggaaattcagttcagtccaatcagggcaaccattcttcatctgga
atgaattaa
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