Daucus carota (carrot): 108202648
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Entry
108202648 CDS
T05350
Name
(RefSeq) probable pectate lyase 22
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr00040
Pentose and glucuronate interconversions
dcr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108202648
Enzymes [BR:
dcr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108202648
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Gene cluster
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Motif
Pfam:
Pectate_lyase_4
Beta_helix
Motif
Other DBs
NCBI-GeneID:
108202648
NCBI-ProteinID:
XP_017226633
UniProt:
A0AAF1BG95
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Position
9:complement(45420019..45421812)
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AA seq
404 aa
AA seq
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MHFTFLFCLFIVLLVGPSFTLSSPVQDPELVVHEVHKSINASRRKLSFLSCGTGNPIDDC
WRCDKNWEKNRQRLADCAIGFGKNAIGGKNGDIYVVTDSKDDDPVNPKPGTLRYGVIQDE
PLWIIFERDMVIQLREELMMNSFKTIDGRGASVHIAGGPCITIQYVTNIIIHGVNIHDCK
QGGNTNVRDSPGHYGYRTISDGDGVSIFGGSHVWVDHCSLSNCNDGLIDAIRGSTAITIS
NNYMTHHNKVMLLGHSDTFTQDKNMQVTIAFNHFGEGLVQRMPRCRHGYFHVVNNDYTHW
EMYAIGGSAAPTINSQGNRFLAPNGQFDKEVTKHEDAPEDEWRRWNWRSEGDLMLNGAYF
TTSGAGASSGSYAKASSLGARSSTMVSSLTGGAGALICRKGSKC
NT seq
1215 nt
NT seq
+upstream
nt +downstream
nt
atgcatttcacatttctgttttgtttgttcatcgttcttcttgtaggtccaagctttact
ctgtcctcccctgttcaagatcctgagctagtagtacacgaagtacacaagagtatcaat
gcatctaggaggaagttgagttttttgtcatgtggtacggggaatcctattgatgattgc
tggagatgcgacaagaactgggaaaagaaccgacagcgtttagcagattgcgcgataggc
tttggcaaaaatgccattgggggaaaaaatggtgatatttatgtggtcacagactcgaaa
gatgatgatcctgtgaacccgaagccagggacattgaggtatggtgtcatccaagacgag
cctttgtggatcatttttgaacgagacatggtgatccagctgcgcgaagaattgatgatg
aactcgtttaagaccattgatgggcgtggcgcgagtgtccatattgctggagggccatgc
attacgattcaatatgtgacaaatattataattcatggtgtgaatattcatgactgcaag
caaggggggaacacgaatgtcagagactctccggggcattatggatacaggacaatttcg
gatggtgatggagtttcgatttttggaggaagtcatgtttgggttgatcattgctctttg
tcaaattgtaacgatggtcttattgatgccattagagggtccacagcaatcacgatatcg
aacaattatatgactcaccataacaaggttatgttattgggtcatagtgatacttttacg
caagacaagaacatgcaagtcactatcgccttcaaccactttggcgaaggccttgttcag
aggatgccgaggtgtaggcatggatacttccatgtggtgaacaatgactatactcattgg
gaaatgtacgcgattggtggcagtgctgctccgactatcaacagccaaggcaatcggttt
cttgctcccaatggtcaattcgacaaagaggttactaaacacgaggacgcgccagaggat
gaatggcgtcgatggaactggaggtctgaaggggacttgatgctcaacggagcctatttc
acaacatcaggggcaggtgcgtcttctggaagctatgcaaaagcttcaagccttggcgca
agatcgtctacgatggtgagctcattaacagggggtgcaggtgctcttatttgccgaaaa
ggttccaaatgttga
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