Daucus carota (carrot): 108202768
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Entry
108202768 CDS
T05350
Name
(RefSeq) transcription initiation factor TFIID subunit 2 isoform X1
KO
K03128
transcription initiation factor TFIID subunit 2
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03022
Basal transcription factors
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03022 Basal transcription factors
108202768
09180 Brite Hierarchies
09181 Protein families: metabolism
01002 Peptidases and inhibitors [BR:
dcr01002
]
108202768
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108202768
03036 Chromosome and associated proteins [BR:
dcr03036
]
108202768
Peptidases and inhibitors [BR:
dcr01002
]
Metallo peptidases
Family M1
108202768
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
Basal transcription factors
TFIID
108202768
Coactivators
SAGA/TFTC/STAGA complex
108202768
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
TFTC complex
108202768
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Peptidase_M1
HEAT_2
PHD_NSD
Peptidase_C47
Motif
Other DBs
NCBI-GeneID:
108202768
NCBI-ProteinID:
XP_017226793
UniProt:
A0AAF1AFD8
LinkDB
All DBs
Position
1:21274793..21304769
Genome browser
AA seq
1457 aa
AA seq
DB search
MAKARKQQKNEEQQKAAGVTDESAGTTGGGEAVVRHQKLCLSIDMDKRRIYGYTELQVVV
PDNGIVGLHADNLVIERVTVNGEVAEFEVFPHYLHLDNDNRWCSVSSASSAADAAGSVYL
SSIDRELVPNLLIMCASKDVQSVDEHQHGQENSDNGLQSSGEFKQNSKLIHIDYWVDKAE
TGIHFNKDVLHTDNQTRRACCWFPCMDDDLQCCCYDLEFTVANNLVAASTGSLLYQVLNE
DDPTRKTYVYRVDVPVSARWISLVVAPFEIISDNNCCLLSYMCMPNNLSRLRNSVAVFHR
TFSYYEDYLGTSFPFGSYTQVFIAPEMAISSSTVGASMSIFSSKILFDEKVIDQTMETRI
KLAYALARQWFGVYITAASPNDDWLLDGLAWFLTDSFIKQFLGNNEARYRRYKANCAVCK
SDDSAATALCCSLSCKDIYRTKCIGFIGKLRSWKSVAVLQMLEKQMGPESFRKILQRIVI
RARDATHSSRSLSSKEFRQFANKVGNLERPFLKEFFPRWIESYGCPMLKMGFSYSKRKNI
IELAVMRGFTAMPDTSTEPTYGKAESENREGGWPGMMSIRVHELDGMYDHPILPMAGETG
QLLEIQCHSKLAAKRFQRPKKGAKPDGSDDNNEAPPSVDIRSNNDSPLLWIRADPEMEYL
AEIDFNQPVQMWINQLEKDKDVVAQAQAIATLEMLPQLPFSVVNALNGILTDSKAFWRIR
VEVAFALANTASEETDWAGLQYLLKFYKSRRFDANIGLPKANDFRDYPEYFVLKAIPHAI
AMVRSSDNKSPREAVEFILQLLKYNDNNGNPFYDVFWLASLVQSIGELEFGQQNIIFLSS
LLKRIDRLLQFDRIMPSYNGVLTISCIRTLTQIAIKLNGFIPFDRVFELIKQFRSPDTMW
EVRIEATRALLDLEFQCNGIDVALMQFISYLGEESSLKGQLKLGVHAVRLCQLAGSAHDN
PIKTETLVALLCLLECPVAFNNVNLRHYLFCILQVLAGRPPTLSGVPRDETLRMGHAETC
TELKNIFAALVKHSKPPVCTLNPTYEDGSGVPGATREVDTEEIKSPVPLLDTITLANGVP
VFPESKEVDNIFNTYEQNIPVIDLSHDGSTIPESYIDIDDISKSHNQTQKIFQQDCSMFE
GARKVDVVSCSQERRKPVVKLKVKQSVATNNAEDAENATYGKSQGVRDDADRGASSYISV
DAAERNLTEPVSLSNQSIEDVNSCHDVGSHATASIGSANKLVSGGNDLIKELQCTADSSK
YSVFTPPEIRLPDVADIDIGDCKYVSLQSVSGTLSALDDGSRRVENPYVHSRGKEQKKSK
DKKRKRHDHKSNRDDPEYLERKRLKKKKKQRQKQSGMTGSREASPSLAALGDEVKSKVSV
GPLNQEVKTGNSVHESKLAIVKGEEQLSPLDQRKADLSAEVASLQMSRAEPSTATRQEGG
TSRKIIIKLKTRPVGKP
NT seq
4374 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagctcgtaagcagcagaaaaacgaggagcagcaaaaagcagcaggagttaca
gatgaatcagccggaacaacaggaggaggagaagcagtggttcgccatcagaagctttgt
ctttcaattgatatggacaagcgtcgaatttacggttacacggagcttcaggtggttgtt
cctgacaatggaattgttgggttgcatgctgacaatttggtaatcgagagagtaacagta
aatggggaggtggcagagtttgaagtctttcctcattatttacatttagataacgataat
agatggtgttcagtttcatcagcgagttcagcagctgatgctgctggttcggtctactta
tcatctattgacagagagttagttcccaacttattaataatgtgtgcatccaaggatgta
caatctgtggatgaacatcaacatggccaagaaaactcagataacgggttgcaatcttca
ggtgaattcaaacagaattcgaaattgattcacatcgactattgggtagataaggctgaa
acaggaatacattttaacaaagatgttctccacactgataatcagacaaggcgtgcatgc
tgttggttcccttgtatggatgatgacttacagtgctgctgctatgatctggaattcact
gtggccaataatcttgtagcagccagcactggaagcttgctttatcaggtattgaatgaa
gacgaccctacacgcaaaacatatgtctacagagtagacgttcctgtatctgctcggtgg
atctcccttgttgttgcaccgtttgaaatcatttctgataataattgttgtcttttatca
tacatgtgtatgcctaataacttgtcaagattacgcaacagtgttgcagttttccatcgt
acattcagttattatgaggattaccttggcacatcctttccgtttgggtcatacacgcaa
gtctttattgctcctgagatggcgatatcttcatcaactgtaggagcttccatgagtatt
tttagctccaagattttatttgatgaaaaagttattgatcagactatggaaacaaggatt
aaacttgcatatgctcttgcaagacagtggtttggagtctatatcactgctgcatcaccg
aatgatgattggttgttagatggtctggcttggttcctaactgactcgttcattaaacag
tttctggggaataatgaagcacgctataggcggtacaaggcaaactgtgctgtctgcaaa
tcagatgacagtgccgcaactgctttatgctgttccttgtcatgcaaggatatatataga
actaaatgcattggcttcattggaaaattaaggtcatggaagtctgtagcagtcctgcaa
atgcttgagaaacagatgggaccagagtcctttcgtaaaattttgcagagaattgtcatt
cgggctagagatgcaactcatagttcgagaagtcttagttccaaggagtttcggcagttt
gctaataaggtcgggaatcttgagcgtccatttctaaaagaattttttcctaggtggatc
gaatcttacggctgtcccatgctgaagatgggattctcctatagcaagcggaaaaatatt
attgagttggcagtaatgcgtggatttacggctatgcctgatacaagtactgaaccaacc
tacggtaaagctgaatctgaaaaccgagaaggtggatggccaggaatgatgagcattagg
gttcatgaacttgatggcatgtatgaccatccgatactaccaatggctggggaaacaggg
caactgcttgaaatacaatgccattctaaacttgctgcaaaacgttttcagagaccgaaa
aagggtgcaaagccagatggttccgatgataataatgaagctccgcctagtgtggatatt
cgttcaaacaatgattcaccactgttgtggatcagggctgatccagaaatggagtatcta
gctgaaatagattttaaccaacctgtgcagatgtggataaatcaattggagaaagataaa
gatgttgttgctcaggcacaagcgatcgcaacacttgaaatgctgccacaacttccgttc
tcggtggtgaatgcccttaacggtatccttactgattcaaaggccttctggagaattcgg
gttgaggtggcatttgcattggctaatactgcatctgaggaaactgattgggctggtttg
cagtatctcctaaaattttacaaaagccgcagatttgatgctaacattggactcccaaag
gctaatgactttcgtgactatccagaatactttgtactcaaggctattccacatgccata
gctatggtccgttcttcagataataaaagcccccgggaagctgtggagtttattttgcaa
cttctaaagtacaatgataacaacgggaacccgttttatgatgtcttttggctggcttca
ttagtgcagtcgattggcgagctagaatttggtcagcagaatattatatttttatcatca
ctcctcaaacgtatcgataggcttttgcaatttgacaggataatgccgagctacaatggt
gttctgacaattagttgcatccgcactttgactcaaattgcaataaagcttaatggtttc
atcccttttgatcgtgttttcgagctgatcaaacagttccgctcacctgacactatgtgg
gaagttcgaattgaagcaacaagagcacttcttgatcttgagttccagtgcaatggaatt
gacgtagccttgatgcaattcatttcatacttaggggaggaatcctcattaaaaggtcag
ttgaagttgggtgtccatgctgtgcgcttatgtcagctagctggatctgctcatgacaac
cccataaaaactgaaactcttgtggctttactttgcttgctggagtgtccagtggctttc
aacaatgttaatcttcggcattatttgttctgcattttgcaagtacttgcaggaaggccc
ccaacactttcaggggtccctagggatgagacgctgcggatgggccatgctgagacttgt
actgaattgaagaatatttttgctgctcttgtgaagcactctaagcctcctgtttgcact
ctaaatccaacatatgaagatggttcaggagttccaggtgctaccagagaagtggatact
gaggaaatcaagtctcctgtgcccttattggacactatcaccctggctaacggtgttcca
gttttcccagagtctaaagaagtagataacattttcaacacctatgagcagaacatccca
gttattgatctgtcacatgatggttctaccataccagaaagttacatagacatagatgat
atatccaaaagtcacaaccaaacccagaaaatttttcaacaagattgttcaatgtttgaa
ggtgctagaaaagtagatgtggtttcctgtagtcaagagcgaagaaaaccagttgtaaaa
cttaaagtcaagcaatctgttgcaaccaataatgcggaagatgctgaaaatgcaacatat
ggaaaatctcagggggtgcgtgatgatgctgatcgtggagctagtagttacatctctgtg
gatgcagccgaaagaaatttaacagagcctgtcagtttaagtaatcaaagtattgaggat
gtaaattcatgtcatgatgttggatcccatgcgactgcaagcattggcagcgccaacaaa
ctagtaagtggtggtaatgacttaataaaagaactccagtgtactgctgattcaagtaaa
tactcagtatttactccaccagaaattcggttacctgatgttgctgatatagatatagga
gactgtaaatatgttagtctacagtcagtttctgggacacttagtgctcttgatgatgga
tcgcggagagtggagaatccttatgttcatagtagagggaaagaacagaagaaaagcaaa
gataagaaaagaaagagacatgatcacaaaagcaaccgtgatgatccagagtatctcgaa
cgcaagcgactgaagaagaaaaaaaagcagaggcagaagcaatcgggtatgacaggaagc
agggaggcatctccatctttagcagcattgggtgatgaggtgaaatctaaagttagtgtc
gggcctcttaaccaggaggttaagactggaaactctgttcatgaatctaagttggcaata
gtcaaaggagaggaacagttatctcctctggatcagagaaaggcagacttgtctgcagaa
gtggcatctttgcagatgtctcgtgctgaaccaagcactgctacaaggcaggaaggcggc
acgtcacgcaaaattataatcaaactaaaaactagaccagtaggcaaaccataa
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integrated database retrieval system
