Daucus carota (carrot): 108202952
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Entry
108202952 CDS
T05350
Name
(RefSeq) regulator of nonsense transcripts UPF3
KO
K14328
regulator of nonsense transcripts 3
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03013
Nucleocytoplasmic transport
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
108202952
03015 mRNA surveillance pathway
108202952
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108202952
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
108202952
mRNA cycle factors
P-body specific factors
108202952
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Smg4_UPF3
RRM_2
Motif
Other DBs
NCBI-GeneID:
108202952
NCBI-ProteinID:
XP_017227081
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Position
9:complement(2586750..2594728)
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AA seq
522 aa
AA seq
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MGSRVKSAADRTKVVVRHLPPTISEAMLLEQIDDKFTRRFKFVSFRPGNNSQRHQSYSRA
YIDFQRPEDVIEFAEYFGGHVFVNEKGTQFKTVVEYAPSQRVPKQWSKKDGREGTIFKDP
EYLEFLEFIAKPVENLPSAEIQLERRDAERAGAVKDAPVVTPLMDFIRQKRAAKAGSRRS
LPNGKPDRRSSGTSSASTSSASLKRGSDKRRTSNAMYVLRDTTKSSVGKDKSAYVIVPKK
KDEQISEKSNSVSAAGSDFSSESGVPGSSDIGKKKILLLKGKGKEIPNVASCLPSQHSAV
TPIKNSVIVNAPRPNHRHDASGRIIKSILLNKDSRQNPSTPETPIQVRNQEKDRRPPRAS
NVQLHKKDTNEAPEDRTLGNDLHGSYAEKPEKRTRNKDRPDRGVWTPLRRSDGLHASNES
LSSSASQHMTSLLDTSEGTRGDTKNDMTSGRSGESKGSGRGGHMSVDNGFYKQSNRRGPF
QNGKDADGSLNLGEAKPLKRGNFSGHGSQEKQVWVQKSSSGS
NT seq
1569 nt
NT seq
+upstream
nt +downstream
nt
atgggttcgcgtgtgaagagtgcggcggatcgcacgaaagtagtggtgcggcacttgccg
ccgacgatttcagaggcgatgttattggagcagattgatgataagtttacgagacggttt
aagtttgttagttttcgccccgggaataatagtcagaggcatcaatcgtattctagagct
tacattgacttccagagaccagaggacgtcatagagtttgctgaatattttggcgggcac
gtatttgttaatgaaaagggtactcaattcaaaactgtagttgaatatgctccttcgcaa
cgtgttccgaagcaatggtctaaaaaggatggacgtgaaggaactatattcaaagatccg
gaatatttggagttccttgaattcattgcaaagcctgtggagaatcttcctagtgcagag
atacaattggagagaagggatgcagaacgagcaggtgctgtaaaggatgctcctgttgtt
acacctcttatggattttatccgtcagaaaagagctgccaaagctggttctcggaggtcc
ttgcctaatgggaaaccagacagacgaagcagtggaacatcttctgcaagcactagttca
gcttcactaaaacgaggctctgataagaggaggacctcaaatgccatgtatgttcttagg
gatacgacaaagagctctgttgggaaagacaaatctgcatatgttattgttcctaagaaa
aaagatgagcagatatctgaaaagtctaattctgtttctgcagctggaagtgacttttct
tcggaaagcggagtgcctggatctagtgatattggaaagaagaaaattttgcttttgaag
ggaaaaggaaaagaaattccaaatgtggctagttgcttgccgtcgcagcactctgcagtt
actcctattaagaattcagttattgttaatgcccctagaccgaatcatagacatgatgct
agtggaaggatcattaaaagcatactgcttaataaggattcacgacaaaacccttctact
cctgaaacacctatccaggtcagaaatcaggagaaagacagaaggccacctcgagcatct
aatgtgcagttgcataagaaggatacaaatgaggcaccagaagacaggactttgggcaat
gatttacatggttcctacgctgagaagccggaaaagcgtacacgaaacaaggatagacct
gatcggggtgtttggactcctcttcgccgttcggatggattgcatgcaagtaacgagtca
ttgtcctcctctgcttcgcagcatatgacatctctgttggatacttcagaaggtactcgt
ggtgatacaaagaatgatatgacaagtggacggagtggggagtccaagggcagcggacgt
ggtggtcacatgtcagttgataatggtttttataaacaaagtaatcgtcgtgggccattc
cagaatggaaaggatgcagatggctctttgaacctaggggaagctaaacctctgaaaaga
ggaaatttttctggtcatggttcccaagagaagcaggtttgggttcaaaagtcaagttct
ggttcttag
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