Daucus carota (carrot): 108202960
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Entry
108202960 CDS
T05350
Name
(RefSeq) protein BREAST CANCER SUSCEPTIBILITY 2 homolog B-like isoform X2
KO
K08775
breast cancer 2 susceptibility protein
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03440
Homologous recombination
dcr03460
Fanconi anemia pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108202960
03460 Fanconi anemia pathway
108202960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dcr04121
]
108202960
03036 Chromosome and associated proteins [BR:
dcr03036
]
108202960
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108202960
Ubiquitin system [BR:
dcr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
BRCC complex
108202960
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Centrosome formation proteins
Centrosome duplication proteins
Other centrosome duplication proteins
108202960
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
BRCA complex
108202960
FA (Fanconi anemia) pathway
Downstream FA components
108202960
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
BRCA-2_OB1
BRCA2
BRCA-2_helical
DUF5891
Motif
Other DBs
NCBI-GeneID:
108202960
NCBI-ProteinID:
XP_017227094
LinkDB
All DBs
Position
9:43659724..43670980
Genome browser
AA seq
1305 aa
AA seq
DB search
MSTWQLHSDAENNLRWSRLPDDPQTEVQTAAPTQLRRRLPSISDLALKGYSKLKESNNNN
DSVNESGYQMFRTGSGKPLVANQSSLSKASAMLSEVVFDQGYPELNQSNANSVNELGYQM
FQTGSGNPVAVNQSSLLKASAMLGDIISDQGHSMINESNANSLNDSGYQMFRTGSGKPVA
VNQSSLSKASAMLSDVVSDQGYSKISGSNANSVNESGYQMFRTGSGKPVVVNQSSLLKAS
AMMSDAVSDQGFTKLTGNVGRPLRSPSTFRNGFKNSLALKRSPLSKASSILTNEAEPTVV
TGSGVTVDTGQVKAIDSACNFGNSMFQTGSGKTVTISTSGLARAQKLLCLKDNHTHQGFE
GMMQQLHAIPSNQQSLHHLGLEMGVADKQSKDSISSLRSPLKVRSETSGSELLEVTPDSV
HSISRPSSIKFHTAGGRSISVSSNALQRARSLLGDPELGSFMNEGDAGEPVFSIFKDRKS
NMNLKKSYCSDTCVSDQHSVTRKRVAKNFISPLRPTSSQKQSLVNVGSGKNLIRNFDAEA
HESTTCNDVKGCQKYPKNNDPYSSDNTTREDNIAGSGFQKDPHKKQRGWPLVDISNTTDM
GDRSNKQAVAVKRVVDRRSSGSFKKPRVSKFITPLNNEIPYTENGSLAIDPEESSYKNKF
PGRYPFQATRKYVKEYFGAPPSVNTTLEHLPECIRTMNPDRAEKHCFPSECGSDSVGKEA
FSAMLLQSGASMKYISDTWVTNHYKWIVWKLACYERFYSERYLTVSNVMEELKYRYDREV
NHGHRSAIKRILEGDAPPYSVLVLCISSIQRNTEAIIKNISNSHGVDKSKVANVELTDGW
YAVNAVLDAPLSKKLDSGKLFVGQKLKISGAGLSGWAGPVSPLEVPSTVSLVLHINGTYR
SHWAERLGFCKSGCAPLAFDCIKSGGGVIPSTFVGIQRIYPVLYRERLSDGEYTVRSERM
EAKMQQLYNQRRSEVAEEVISELQRADADILINSDGSEEAAKIFKILETSAEPEILMAGM
SSKQLKSLSIYQAKLEETRQSNIHQSIEKAFENSGLSGRDVTPFMRLSVVGLTTKIGQEK
CYPRKGLITIWNPTEEQKLELVEGQAYAVSGLVAFNSGSDTLYLQTRGPTTKWRHLSSSA
LEQYQPFYKPRKPVSLYNLDEVPLSSEFDIAGFVIFVGEVHATANQRKQWVFVTDCSVHG
SHTNRPSDDLLAISFCAPTSGHDLYLPISHNLVGSTVGFCNIIKKEKDQMNHIWVAETTE
NSDYSLTYEHRQYIHLKGAAIASQKWAEVSSLTVEKLKQKVISIV
NT seq
3918 nt
NT seq
+upstream
nt +downstream
nt
atgtctacgtggcagcttcactcagacgccgaaaacaatcttcggtggagccgtctcccc
gatgacccccaaaccgaagtccaaaccgccgcaccgactcaattacgacgtcgtcttcct
tccatttccgatctagcgctcaaaggttattcgaagttgaaggagagtaataataacaat
gatagtgtgaatgagtcgggttaccagatgtttcggaccgggtcgggcaagcctttagtt
gccaatcagtcttcattatcaaaagcatcagctatgctgagcgaggtcgtatttgatcaa
ggttatccggagctaaaccagagcaatgctaatagtgtgaatgagttgggttatcagatg
tttcagaccgggtcaggtaatcctgtagctgtcaatcaatcttcattattaaaagcatca
gctatgttgggcgatatcatatcagatcaaggtcattcgatgataaacgagagtaatgct
aatagtttgaatgactcgggttatcaaatgtttcggaccgggtcgggtaagcccgtagca
gtcaatcagtcttccttatcaaaagcatcagctatgttgagtgatgttgtatcggatcaa
ggttattcgaaaataagtgggagcaatgctaatagtgtcaatgagtcgggttatcagatg
tttcggactgggtctggtaaaccagtagttgtcaatcaatcgtcactactgaaagcatca
gctatgatgagtgacgctgtatctgatcaaggatttacaaagctcactggaaatgttgga
cgacctcttagaagcccttcaacatttcgaaatggattcaagaattcacttgctttaaaa
aggtctcctctttcgaaagcttcatcaattcttaccaatgaagctgagcctaccgtggtc
acagggagcggggttactgtagatacaggccaggtaaaagcaatagatagcgcatgcaat
tttggaaattcaatgttccagacagggtcagggaaaacagtaactatatctacctcaggt
cttgcaagagcccaaaaattgttgtgcttgaaggacaatcacactcatcaaggttttgaa
ggaatgatgcagcagttacatgccatacctagtaatcagcaaagtttgcatcatttgggt
ttggagatgggtgttgctgataagcagtcaaaagacagcatctcaagtctaagatctcct
ctcaaggtaaggtctgaaacatcagggagtgagttgctggaggttactccagatagtgtg
cattctatttcaagaccatcttctattaagtttcatactgctggtggaagatctatatca
gtttctagtaatgccttgcaacgtgcaaggagccttcttggagacccagagttgggaagt
ttcatgaatgaaggggatgctggtgagcctgtcttttccatttttaaagacagaaaatcg
aatatgaatttaaaaaaatcatattgctcagatacatgtgtttcggaccaacactctgta
acaagaaaacgagtggcaaagaacttcatatctcctctgcgtccaacttcctcccaaaaa
caatccttggttaatgtaggttcagggaaaaacttgatcagaaactttgatgcagaggcc
catgaaagcactacttgtaatgatgtgaagggctgccaaaagtatcctaagaataacgat
ccctattcctccgataatacaacacgcgaagacaatatagctggttctggtttccaaaaa
gacccacacaaaaagcaaagaggttggccattagttgatatctcaaacaccactgacatg
ggtgatagaagtaacaaacaagctgtggctgtaaagagagtagtggataggaggagctct
ggttctttcaagaagccccgtgtttctaaatttatcaccccccttaacaatgaaattcca
tatactgaaaatggttcactagccatagatcctgaagaatcttcttacaagaataagttt
cctggtcgataccctttccaggctactcgaaagtatgtcaaagagtattttggtgcgccg
ccatctgtcaatactacgttggagcatttgccagaatgtattagaacaatgaatccagat
agagcagagaaacattgtttccctagtgaatgtggttctgatagtgttgggaaagaagct
ttttctgcaatgttgctgcaatctggagcttccatgaaatatatttcagacacttgggtt
acaaatcactataagtggattgtctggaagcttgcatgctatgaacgattttattctgag
aggtatctgaccgttagtaatgttatggaagaactgaaatacagatatgatagagaagta
aatcatggacatcgatcagctataaaaagaatcttagaaggagatgcaccaccgtattct
gtactggtactttgcatatcatccatccagagaaatacagaggcaataatcaaaaatatc
agtaactcacacggagttgataaaagcaaagttgcaaatgtggaattgacagatgggtgg
tatgcagtgaatgctgtactagatgcaccattgtctaaaaagctggactccgggaaattg
tttgtcggacaaaaacttaagatctcaggagcaggactaagtggttgggctggtccagtt
tcacctctcgaggtgccgagcaccgtcagcttggttttgcacattaatggaacttacaga
agtcattgggctgaacgtttgggcttctgtaagagtggatgtgctccactagcatttgac
tgtatcaagagtggtggaggagtaattcccagcacatttgtcggaatacaaagaatatac
cctgttctatatcgggaaaggttaagtgatggggaatacactgtaaggtcagagaggatg
gaagctaagatgcagcagttatataaccaaaggcgctctgaagttgcagaagaagttata
tccgagttacagagggcagatgcagatatacttataaatagtgatggaagtgaagaagcg
gcaaaaatctttaagattcttgaaacatctgctgaaccagaaattctgatggctggcatg
agttcgaagcaactaaaatctttgtctatttatcaagcaaaactagaggaaacaaggcag
tcaaacattcatcaatctatcgaaaaagcttttgaaaattctggtcttagtgggagagat
gtcaccccatttatgaggttgagtgtagtcgggttaaccacaaaaattggtcaggagaag
tgttacccgcgaaaaggcttgattacgatatggaatccgactgaggaacagaagttagag
ttggttgaaggacaggcatatgctgtttcaggacttgtagcatttaattctggttcagat
accctttacttgcaaacacgaggacctaccaccaaatggcggcacttatcttcctcggcc
ttggaacagtatcagcccttctataaaccacggaaacctgtatcgttgtacaatttagat
gaagttcctctctcaagcgaatttgatattgctggatttgtcattttcgtgggtgaggtt
catgcaactgctaatcaaaggaagcaatgggtttttgtgacagactgctccgtacatgga
tcacatactaacaggccatctgatgatttacttgcaattagcttctgcgcaccaactagt
ggtcatgatttatatctaccaatcagccataaccttgttggatcaacggttggtttctgt
aatatcattaagaaggaaaaggaccaaatgaatcatatctgggtggcagaaaccacggaa
aattcagattactccttaacttatgaacatagacaatacattcaccttaaaggtgctgct
attgcttctcaaaagtgggctgaagtttcaagtttgacggttgagaaactcaagcagaag
gttatatctattgtataa
DBGET
integrated database retrieval system
