Daucus carota (carrot): 108203153
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Entry
108203153 CDS
T05350
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp31 homolog
KO
K12844
U4/U6 small nuclear ribonucleoprotein PRP31
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108203153
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108203153
Spliceosome [BR:
dcr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6 snRNP specific factors
108203153
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
Nop
Prp31_C
Motif
Other DBs
NCBI-GeneID:
108203153
NCBI-ProteinID:
XP_063940204
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All DBs
Position
9:44806009..44810690
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AA seq
484 aa
AA seq
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MATVADSFLADLDELSDNEEDILDEDNVEADNMEEDVDGELADIEALNYDDLDNVSKLQK
TQRYIDIMQKVESALEKESDVSTHGVVLEDDPEYQLIVDCNALSVDIENEIIIIHNFIRD
KYRLKFPELESLVHHPIDYARVVKKIGNEVDLTLVDLEGLLPSAIIMVVSVTASTTSGKP
LLAEDLQKTVEACDRALTLDSAKKKVLDFVEGRMGYIAPNLSAIVGSAVAAKLMGTAGGL
SSLAKMPACNVQLLGAKKKNLAGFSTATSQFRVGYIEQTEIFQGTPPALRMRACRLLASK
STLAARVDSTGGDATGGVGRAFREEIRKKIEKWQEPPPAKQPKPLPVPDSEPKKKRGGRR
LRKMKERYAVTDMRKLANRMQFGIPEESSLGDGLGEGYGMLGQAGSGKLRVSVGQNKLAA
KVAKKFKERSFGSGATSGLTSSLAFTPVQGIELSNPQALANQLGSGTQSTYFSETGTFSK
IKRP
NT seq
1455 nt
NT seq
+upstream
nt +downstream
nt
atggcaactgttgctgattctttcttggctgaccttgacgagctttcggataatgaggaa
gatatccttgatgaagataatgtcgaggctgataacatggaggaagatgtggatggggag
cttgcagatattgaagccctcaactatgatgatctggataatgtctctaagctacagaaa
acccaacgttatattgatatcatgcagaaagttgaaagtgcacttgagaaggaatctgat
gtctcaacgcatggtgttgtcttagaggatgatccagaataccagctgattgtagactgc
aatgccttgtccgttgatattgaaaatgaaattattattattcataattttatccgtgac
aagtaccgactaaaatttccagagcttgaatcacttgttcatcacccaattgattatgcc
cgtgtggtgaagaaaatcgggaatgaagtggatcttacccttgttgatctagaagggcta
ttgccctcagctattattatggttgtttcagtgacagcatcaaccacaagtggcaagcca
ctgctagccgaagatctccaaaaaactgttgaggcatgtgacagagctcttacattagat
tcggcgaagaaaaaggttcttgattttgtagaaggcaggatgggatatattgctccaaac
ctttctgctatagtcggtagtgctgttgctgcgaaattgatgggcacagctggaggttta
tcatcgttggcgaagatgccagcatgcaatgttcagcttctgggtgccaaaaaaaagaat
ttagcaggattttcaactgcaacttctcagtttcgtgtagggtacattgagcaaacagaa
atattccagggcacaccccctgctttaagaatgcgtgcttgtcgtctgttagcttcaaaa
tccacacttgctgctcgtgtggattctactggaggagatgctactgggggagttggaagg
gcttttcgcgaggagatacgtaagaagattgagaagtggcaagaaccgcctcctgcaaag
cagccaaaaccactcccagttcctgattctgagccgaaaaagaagagaggtggtcgtaga
ttaagaaaaatgaaagaaagatatgctgtaacggatatgcgtaaactagcgaacaggatg
cagtttggaatcccagaagagagctctttgggggacggtcttggtgaaggatatggaatg
cttggccaggctggaagtgggaagttgcgtgtgtcagttggtcaaaacaagcttgctgct
aaagttgccaaaaagtttaaggagaggagctttggtagtggtgctacctcaggactgact
tcaagtttggccttcacacccgttcagggaattgagctgtccaatccacaggcactagct
aatcaacttggcagtggaacacaaagcacctacttctctgaaacaggaacgttttcgaag
ataaagagaccttga
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