Daucus carota (carrot): 108203250
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Entry
108203250 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108203250
KO
K12874
intron-binding protein aquarius
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108203250
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108203250
Spliceosome [BR:
dcr03041
]
Complex B
Other components
Prp19-related factors
108203250
Complex C
108203250
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Aquarius_N_1st
Aquarius_N_2nd
AAA_11
AAA_12
Aquarius_N_3rd
AAA_19
AAA_30
UvrD-helicase
ResIII
UvrD_C_2
AAA_22
AAA
SLFN-g3_helicase
DUF3670
AAA_16
Motif
Other DBs
NCBI-GeneID:
108203250
NCBI-ProteinID:
XP_017227514
UniProt:
A0AAF1AIY8
LinkDB
All DBs
Position
1
Genome browser
AA seq
1523 aa
AA seq
DB search
MTKVYGTGALDFKRHRVAEYPLNESKPGTNAPSSITLLEIQRDKLTRIAEENWAKSDGKK
LKAFSEELVREIYHTELLVKSGRKTVPLQRVMILEVSQYLENYLWPNFDPETATFEHVMS
MILMINEKFRENVAAWICFYNNKDLFNSFLEKVLHLKEGRSLSIAEKTNYLLFMINAFQS
LEDEVVSKTFLRLTSLQCWHSLSYGRFQIELCLNPDLIKKWKKVAKKAKEAKKRDESFDL
STVLEVKFLRSIVEEFLEVLDCEVVDESGQVNESSILYCERFVEFLIDLLSQLPTRRFFR
PLVADVAVVAKCHLSYLYKHEKGKLFSQLVDLLQYYENFEIDDRSGRQMTDDEVLQTHYE
RVHSFQLLAFKKVPKLRELALANIGSIHRRADLSNKLSKLTEQELRDLVCSKLKLVSKND
PWSEREEFLIEVMVSYFERKQSQKEAINALPLYPNEQIMWDESLVPSINYSGEGCLALPK
LNLQFLTLHDYLLRNFNLFRLESTYEIREDIQEAVPHLLAYVNNEGETAFRGWSRMGVPI
KEFKIRSVKQPNIGEVKPSSVTAEVTFSISSYKAQVRSEWNSLKEHDVLFLLSIRPLFEP
LSAEEAETATVPQKLGLQYVRGCEVIEMRDEEGTLMNDFTGRIKRDEWKPPKGELRTVTV
ALDTAQYHMDVTDIAEKGGDDVYGTFNVLMRRKPKENNFKAILESIRDLMNETCIVPDWL
HDIFLGYGNPSAAQWTNMPDLLDTVDFKDTFLDADHVLQCFPDYQVSFLNTDGTENLLPS
PPFRIKLPRNLKGNVHALPGNEKSAVASIDAVGKADNGSEKDTLIVEAYIPPDPGPYPQD
QPKQNSVRFTPTQIGAIISGIQPGLTMVVGPPGTGKTDTAVQILNVLYHNCPSQRTLIIT
HSNQALNDLFEKIMQRDVPARYLLRLGQGEQELATDLDFSRQGRVNAMLVRRLELLAEVE
RLAKSLQLPEDVGYTCETAGYFWLLHVYSRWEQFLAACAKPENKEKPSFVHDFFPFKEFF
TNSPNPIFTSQSFEKDMRAAKGCFRHLKTMFQELEECRAFELLKSTADRANYLMTKQAKI
VAMTCTHAALKRKDFLQLGFKYDNLLMEESAQILEIETFIPMLLQRQEDGYARLKRCILI
GDHHQLPPVVKNMAFQKYSHMDQSLFTRFVRLGIPYIELNAQGRARPSLARLYNWRYRDL
GDLPNVKENAIFHRANAGFSYDYQLVDVPDYHGRGESAPSPWFYQNEGEAEYLVSVYIFM
RLLGYPANKISILTTYNGQKLLIRDVISRRCVPYDFIGPPHKVTTVDKFQGQQNDFILLS
LVRTRFVGHLRDVRRLIVAMSRARLGLYVFGRRSLFEQCYELQPTFQLLLQRPDLLALNL
NEVTAFTNRHVEDTGQGQLVSGVEEMASIVNYKMDQVYQARMLSFPAYSEHAPMMSISGQ
NGLQNSLSSGDMMDTDTPASQNGSPEDVPAEHKSQDPTVVEHPSAAEGEMGPQSVNGNLT
TEAPGVDGNSIAPGNSLDEERGE
NT seq
4572 nt
NT seq
+upstream
nt +downstream
nt
atgacgaaagtatacggaaccggggctctcgatttcaagcgccaccgagtcgccgagtat
ccactcaatgagtcaaagcctggtactaatgcaccgagttcaatcactctacttgagatt
cagcgagacaagctcacgcgaatcgccgaggagaattgggcgaaaagtgatggcaagaaa
ttgaaggcgtttagtgaggagcttgtgagggagatttatcacactgagttgctggtcaag
agtggcaggaaaacggtgccgttgcagcgagttatgattttggaagtcagtcagtatctg
gagaactatttgtggccgaattttgatcccgagacggcgactttcgagcatgtcatgtca
atgattcttatgattaatgagaagtttcgggagaatgttgctgcttggatttgcttctac
aataataaggatctattcaactcatttcttgagaaggttttgcatttgaaagagggaaga
agcttgagtattgccgaaaagactaattaccttctttttatgataaacgccttccagagc
ttggaagatgaggtagtgagcaaaacatttttaaggttaacaagtttgcagtgttggcat
agtctatcatatggccgttttcagattgagctgtgccttaatccagatctgattaagaaa
tggaaaaaggtagctaaaaaagcaaaggaggctaaaaaacgagacgagtcgtttgatcta
tcgactgtgctggaagtaaagtttttgaggagtattgttgaagagtttttagaggtactt
gattgtgaggttgttgatgaatctggacaagttaatgaatcttctatcttgtactgtgag
agatttgtggaatttcttattgacctcttgagccagcttccgactaggagattttttagg
cctttagtggctgatgtagcagtagttgccaaatgtcatttgagttatctgtacaaacat
gagaaaggaaagctcttttcgcaattggttgacttgctacagtactatgagaactttgag
attgatgaccgttcagggaggcagatgaccgatgatgaggtgcttcagactcattatgaa
cgagttcactcctttcaacttttagcgtttaagaaagtcccaaagctgcgagaacttgct
ctggcgaatattggatcaattcataggcgtgccgatctttcaaataagctttctaaactt
accgaacaagagcttagggatctagtctgtagtaagctcaaactggtgtcaaagaatgat
ccttggtctgaaagggaagaatttctgattgaagtgatggtatcttactttgaaagaaaa
caatcccagaaggaagcaataaatgctctacctctctacccaaatgaacagataatgtgg
gatgaaagccttgtaccgagcatcaattactccggggaaggatgtctggcacttccaaag
cttaatctgcaatttttgacccttcatgattaccttcttagaaatttcaacctctttcgt
cttgagtcaacatatgaaatccgagaggatatacaagaggctgtaccacacttacttgcc
tatgtcaataatgaaggagaaactgcttttcgtggttggtcaagaatgggcgtgccgata
aaagaatttaagatcaggtctgttaagcaaccaaatattggagaagttaaaccatcatct
gttacagcagaagtaacattcagtatatccagttacaaggcacaagtaagatctgagtgg
aattccctgaaagagcatgatgttctgtttctactttccattcgcccgttgtttgagcct
ctgagtgccgaagaggcagaaactgccaccgttccacaaaagcttggtcttcaatatgta
cgcgggtgtgaagttattgagatgcgtgacgaggagggaactctcatgaatgatttcact
ggtcgaattaaacgagatgaatggaagcctccaaaaggagaactgagaactgtaactgtt
gctctagatacggcacagtatcatatggatgttactgatattgcagaaaaaggtggagat
gatgtttatggtacatttaatgtattgatgaggagaaagcccaaggaaaacaattttaaa
gcaattctggaatctattagagatctaatgaatgaaacttgtattgtgcctgattggttg
catgatatatttttgggctatgggaatccctctgcagcacagtggactaacatgcctgat
cttctggacaccgtagattttaaagatactttccttgatgctgaccatgttttacagtgt
tttccagattatcaggtttcttttttgaatacggatggcacagagaaccttttaccaagt
cctcccttccgtatcaaacttcctagaaatctaaaaggcaatgttcatgctcttcctggt
aatgagaagtctgctgtagcatcaattgatgctgttggcaaagcagacaatggttctgag
aaagatacactgattgttgaggcttatatccctcctgatccaggcccatatccccaggat
cagccaaagcagaactcagttagattcaccccgacacagattggagctatcatctcaggt
attcagcctgggctaactatggttgttggtccacctggtacaggaaagactgatactgct
gtgcagatcttgaatgtcctatatcacaactgtccttctcaaagaacactgataattact
cattcaaatcaagctttgaatgatctctttgagaagataatgcagagggacgtgcctgct
cgttatcttctccgtcttggtcaaggtgaacaagagttagcaacagatcttgatttcagt
cgccaaggccgtgttaatgcaatgcttgttagacggttagaattgcttgctgaagtagag
aggctagcgaaatctcttcaattgcccgaggatgttggttatacatgtgaaacagctgga
tacttctggttgcttcatgtgtattctcgttgggaacaatttctggctgcatgtgctaag
cctgagaataaagagaaacccagctttgttcatgatttcttcccctttaaagagttcttt
acgaatagtccaaatccaatttttaccagccagtcctttgagaaagacatgcgtgcagct
aaagggtgctttcgccatctaaaaaccatgttccaagagcttgaagagtgtcgggctttt
gaattgctcaagtctacagctgatcgggcaaactacttgatgaccaaacaggcaaaaatt
gtagcaatgacttgcactcatgcagctctgaagcggaaagattttcttcagctgggattt
aagtatgataatctactaatggaagaaagtgctcaaattttggagatcgaaacttttatt
ccaatgttgcttcagagacaggaagatggatacgctcgactgaagcgctgtattttgatt
ggtgaccatcaccaattgcctccagttgtaaagaatatggctttccaaaagtacagtcac
atggatcagagtctattcacaaggtttgtccgactgggtataccatatattgagctcaat
gcacaaggtagagctaggccaagtttagctcgactctacaactggaggtatagggatctg
ggagatcttccaaatgtgaaggagaatgccattttccatagagcaaatgctgggttttcc
tatgattatcagttagtagatgtgcctgattaccatgggagaggtgagagtgctccttct
ccatggttctatcaaaatgaaggagaggctgaatatcttgtcagtgtctacattttcatg
cgcttattgggataccccgcaaataagatttccatcttgacaacttataatggccaaaag
ctgctgattcgtgatgtcattagcagacgatgtgtaccatatgatttcattggcccacca
cacaaagttacaacagtcgacaaatttcaaggtcaacaaaatgattttatattgctatcg
cttgtccgtactcgctttgtgggtcaccttcgtgatgttagaagattgattgttgccatg
tctcgtgcacgtctgggcctatatgtttttggtcgacgatcactgtttgaacaatgctac
gaactgcaacccacatttcagcttctgcttcagagaccagatctgcttgcccttaattta
aatgaggttacagcatttaccaatcgtcacgtggaggacactggacaagggcaacttgtc
agcggggttgaagagatggctagtattgtcaactacaaaatggatcaggtgtatcaggca
cggatgctgagctttcctgcctactcagaacatgcaccaatgatgagtatatcagggcaa
aatggtcttcagaactcattgtcctcaggtgatatgatggatactgatacacctgcatca
caaaatgggtccccggaagacgtgccagctgagcataaatctcaagatcctacagttgta
gaacacccatcagcggcagagggagagatgggtcctcaaagtgtaaatggaaatctcaca
acagaagcacctggagttgacggtaatagtatagcccctggtaacagtttagatgaggaa
aggggggagtaa
DBGET
integrated database retrieval system
