KEGG   Daucus carota (carrot): 108203300
Entry
108203300         CDS       T05350                                 
Name
(RefSeq) probable splicing factor 3A subunit 1
  KO
K12825  splicing factor 3A subunit 1
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108203300
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dcr03041]
    108203300
Spliceosome [BR:dcr03041]
 Complex A
  U2 snRNP components
   U2 snRNP specific factors
    108203300
 Complex B
    108203300
 Complex C
   U2 SnRNP specific factors
    108203300
SSDB
Motif
Pfam: PRP21_like_P Surp ubiquitin
Other DBs
NCBI-GeneID: 108203300
NCBI-ProteinID: XP_017227612
UniProt: A0AAF0W8Y3
LinkDB
Position
1:52009131..52013799
AA seq 795 aa
MLGSGPILPLPAPPTDGNLGPLPPSQLQDREIQDIEDEASKSSAAPVSVATHTKTIGIIH
PPPDIRTIVEKTATFVAKNGQEFELRIMNNNANNPKFNFLKSSDPYHAYYQHRLSEFRSQ
TSTTQQPTQGSDASGLESTAPAGEDSNAEAKPDPSEQFRTVRKPLEPPAAEQYTVRLPEG
ITGEELDIIKLTAQFVARNGKSFLLGLTSREGNNPQFHFMRPTHSMFMFFTSLADAYSKV
LMPPKDLTDKLQSSVDSMTTILERCLHRLEWERSQEQARQKAEDEVEQERIQMAMIDWHD
FVVVEMIDFADDEDDDLPPPMTLEEVIRRSKMSTLEDEEIIEPGKEVEMEMDEEEVQLVE
EGMRVASIEENGGDKPSEARITPMEEDQPMRIVKNWKRPEERNPAERDPTKYVVSPITGE
LILINEMSEHMRISLIDPKYKEQKERMFAKIRDTTLAQDDEISKNIMGLARTRPDIFGTT
EEEVSNAVKAEIEKKKDEQPKQVIWDGHTGSIGRTATQAMSQNANGEDINDAASNLPGPA
APPRPGMPSIRPLPPPANLAVNIPRPPNPGQYPAPPNSGVLAPPPPRPPLQVRAPPPPMQ
MNYGQQPFMLNRPPGPPSISVNPPSIPVPPPPGSQYTPLAAPRPYAPHVMPPHGMHLVQP
PMPLGMPPPPPPEEAPPPLPEEPEPKRQRHDDSLLIPEDQFLAQHQGPAHINVSVPNIDE
GNLKGQVLEIKVQSLSETVSSLKEKIAGEIQLPSNKQKLSGKAGFLKDNLSLAYYNVAGG
ETLSLSLRERGGRKR
NT seq 2388 nt   +upstreamnt  +downstreamnt
atgttaggctccgggccgatactgccgcttccggccccacccacggatgggaatcttggt
cctctcccgccatctcaattgcaagatagggagattcaagatatcgaggatgaagcaagc
aagtccagtgcggctcctgtatcggttgcaactcacaccaaaactattggaattattcat
ccaccaccggacattcgaaccattgttgagaaaacagctacttttgtggcaaagaatggg
caagaatttgaacttagaattatgaataataatgccaacaacccgaaatttaatttctta
aaatcttcggacccgtaccatgcctattatcagcaccgtttatctgaatttcgtagtcag
acatctacaacgcagcagcctactcaaggttcagatgcatctggtctggaatcgacagct
cctgctggcgaagacagtaatgcggaggcaaagccagatccctcggaacagtttaggact
gttcggaaaccccttgaacctccagcagcagagcagtacactgtccgtcttcccgaaggc
attacaggggaggagttagatataattaagctcacagcacagtttgtagctcgcaatggg
aaatcatttttgttgggactcacgagtagggaggggaataacccccagttccacttcatg
aggcccacgcatagcatgttcatgttttttacttcgctggcggatgcatattctaaagtg
ttgatgcctcccaaggatttgactgataaactacagagtagtgttgacagcatgacgacc
atacttgaacgttgccttcacaggttggagtgggaacgttctcaagagcaggcaaggcaa
aaagctgaggatgaggtagagcaagaaaggatacagatggctatgattgattggcatgat
tttgttgttgttgagatgatagactttgctgatgacgaggatgatgatttaccacctcca
atgactcttgaggaagttataaggagaagcaagatgtcaactttggaagacgaagaaatt
attgagcctggaaaggaagtagaaatggagatggatgaagaagaggtgcaacttgttgaa
gaaggcatgagggttgccagtattgaagaaaatggtggtgataagccaagtgaagccaga
ataaccccaatggaagaggatcaaccaatgagaattgtgaagaactggaagaggcctgag
gagagaaatcctgctgagagagacccaactaaatatgtcgtctccccgatcactggagag
ttaattcttataaatgagatgtctgaacatatgaggatatctctcattgatcccaagtac
aaggagcagaaggagagaatgtttgccaagattagggataccactcttgctcaggatgat
gaaatatcgaaaaacattatgggacttgcacggacccgtcctgatatatttggtacaacc
gaggaggaggtatccaatgcagtcaaggcagagatcgaaaagaagaaagatgagcaacca
aagcaggtcatatgggatggtcatactgggagtattgggcgaactgcaactcaggccatg
tctcaaaatgctaatggagaggatataaacgatgcggcaagcaatcttcctggccctgct
gctcctcctagacctggtatgccgtccattcggccacttcctccacctgctaatcttgct
gttaacattccccgacccccaaatccaggtcaatatccagctcctccaaatagtggggtt
cttgctccacctccaccacggccaccacttcaagtgcgggctccaccacccccaatgcaa
atgaactacggacagcaacctttcatgcttaatcgacctcctgggcctccatcgatttct
gtaaacccaccaagtattcctgtgccaccaccaccaggatctcagtatacaccattagca
gctcctcgaccttatgcaccccatgtcatgccaccacatggaatgcatttggttcagcca
cctatgcctctagggatgcccccaccacctccacctgaggaagctcctcctccacttcca
gaggagcctgagccaaagaggcaaaggcatgatgattctttgcttattccggaagatcag
ttcctggctcagcatcagggaccagcgcacatcaatgtgtctgtgccaaatattgatgaa
ggaaacctgaaagggcaggtgctggagattaaagtacaatcgctgtctgaaacagttagc
agcttgaaagagaaaattgctggagagattcagcttccttctaataaacagaaactgagc
ggaaaggctggctttctcaaggataatctttcccttgcatattacaatgtcgcaggagga
gagacactttctctttcattgagagaacgtggtggtagaaaaagataa

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