Daucus carota (carrot): 108203392
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Entry
108203392 CDS
T05350
Name
(RefSeq) RNA polymerase sigma factor sigC
KO
K03093
RNA polymerase sigma-I factor
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108203392
Transcription machinery [BR:
dcr03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
108203392
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma70_r2
Sigma70_r4
Sigma70_r3
Sigma70_r4_2
Amidase
Motif
Other DBs
NCBI-GeneID:
108203392
NCBI-ProteinID:
XP_017227798
UniProt:
A0A162AM41
LinkDB
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Position
1:53158154..53161175
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AA seq
553 aa
AA seq
DB search
MGIGFRLNFRWASSVRYPYYCTTSSSWPSSYSFRAMEASYDTTRVSFPYFVLGEIETMHN
DLPRVHSCASAAQTLSNNYLETEHISIRKSSGGDLSCIISSSFRKPGSATSAEASKLSHF
GVLMNNLSMLEKTFADSDVLRLENDILSQLDRLGALKLFHTCLSRTRSRPGNSSVSEDIE
EHQMESHVNADQMAKIVVSSGKKEKRKAKRVKSSWNEKDFYLLPSNSKPKHQHQNLSSPG
KSSKYSGSRPKVARNEAELTVGVKLVANLERIKMQLEKETGETASLSSWAEAANIDKKTL
QQNLHFGCYCKDELLRSTRSLILYIARNYRGVGVGFEDLIQAGSIGVLQGAERFDHTRGY
RFSTYIQYWIRKSILMLVERNCRGVRIPYALSKAVKKIQKARKTLSNSLGTYPDDNEIAE
STGLSLSKIAAASNCLRVVGSLDQRIGDFTSVKYLELMPDTSIKGPEETVMREHMLKDMY
DLLAELDPRERQVLLLRLGLQGHHCMSLQEIGRLFSVSKEWIRKIERTALRKLRDQETLH
SLSHYLYMNHMNQ
NT seq
1662 nt
NT seq
+upstream
nt +downstream
nt
atgggcattggattcaggctcaacttcagatgggcttcttcagttagatatccatactat
tgcaccacctcctcatcttggccttcatcttattcatttagagcaatggaggcttcctat
gacacaacaagagtatcctttccatattttgttctgggagagattgaaactatgcacaat
gatcttccgagagtgcatagttgtgcatctgctgcacagaccttatcgaataattactta
gaaaccgaacatataagtatcagaaagagttctggtggtgacttaagttgcattattagc
agtagttttcggaaacctggttctgcaacaagtgctgaggctagcaaattatcacatttt
ggagtactaatgaataatcttagtatgttggagaagacgtttgctgattcagacgtgctg
aggctggagaacgatatattatcacaattggacaggcttggagctcttaagttgttccac
acttgcctctccaggacgagatcacggcctggtaattcatcagtgtctgaggatattgaa
gagcatcagatggaaagccatgtgaacgctgatcagatggctaagattgttgtttcctca
ggaaaaaaggaaaagaggaaagcaaagagagtgaaatcatcgtggaatgagaaagatttt
tatctgttgccatcaaattctaaacctaagcaccaacatcagaacttgtcttctcctgga
aaatcatcaaaatacagtggctcaaggcctaaagtcgcgaggaatgaggctgaattgaca
gtaggcgtgaagttagttgcgaatttggaaagaattaaaatgcagttggaaaaagaaaca
ggcgaaacagctagcttgagtagctgggccgaagctgctaacatcgacaagaagaccttg
cagcagaatctgcacttcggttgttattgcaaggatgagctcctgagaagcacaagatct
ttgattctttacattgcaaggaactataggggcgtcggagtgggttttgaagatttaatt
caggcaggaagcatcggtgtcctgcaaggtgcagaaaggttcgaccacaccagggggtat
cggttctctacatacatccagtactggataagaaagtccatattgatgcttgttgagcgg
aattgcagaggagttcggattccttatgcattgagcaaagcggtgaagaagatacagaaa
gctagaaagaccctgagtaacagccttgggacttatccagatgacaatgaaatagcagag
tccacaggcctgtccttgtctaaaattgcagcagctagtaactgcctgagagtcgtcggt
tctcttgatcagagaatcggggatttcaccagtgtcaaatatctggaactcatgcccgat
acctcgatcaagggtcctgaagaaactgtcatgagggagcacatgttgaaagacatgtat
gatcttctagccgaattagatcccagggaacgacaggttctgctactgaggctcgggctt
cagggccatcactgcatgtcgcttcaagagatagggaggctattctctgtgagcaaagaa
tggatacgaaaaatagagagaacagctttaagaaaactcagagatcaggaaactcttcat
agtctaagccattatctgtatatgaaccatatgaatcagtaa
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