Daucus carota (carrot): 108203448
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Entry
108203448 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108203448
KO
K18195
rhamnogalacturonan endolyase [EC:
4.2.2.23
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09190 Not Included in Pathway or Brite
09191 Unclassified: metabolism
99980 Enzymes with EC numbers
108203448
Enzymes [BR:
dcr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.23 rhamnogalacturonan endolyase
108203448
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Gene cluster
GFIT
Motif
Pfam:
Rhamnogal_lyase
CBM-like
fn3_3
CarboxypepD_reg
Hid1
Motif
Other DBs
NCBI-GeneID:
108203448
NCBI-ProteinID:
XP_017227879
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Position
1:44299945..44306073
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AA seq
682 aa
AA seq
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MGKLGKSQRRRGYYFVGFLGFMFQLFLLTESTVRRQNITSSNSRPVHLDILDDQVVVDNG
LAKFTFSKPAGMITGINYNGIKNILEQRNKETNRGYWDVVWSKPEDPGDIYDVLQGTHFR
VVVANEDQVELSFTKTWIPPVKGTKRPRDDNSLPLNIDKRYIVLRGVPGFYSYATFERLE
GWRDMVLYEGRIAFKLQEKLFRYMAVSDDRQRVMPTFEDRERGKALAYKEAVLVTDSIKD
THSVEVDDKYQYSAENRENKVHGWICSNPATGFWMITPSSEFRVGGPLKQDLTSHAGPVT
LSMFFSAHYAGKPLALTFKEGEPWKKVFGPVFIYLNSGLDTESTVSLWQDAKEQMLIETE
SWPYDFPRSGDYFLANKRGTLSGRLLVRDRYTRIELKTAKFANVGLALPGAAGSWQTENK
GYQFWTQADAMGYFVIKNVLPGTYNLYAWVPGLIGDYKYAYNIIIKPGGIVKLGNIVYVP
PRNGPTLWEIGIPDRTAAEFFVPQPITTLENTLYEEDTAEGFRQYGLWDRYTDLYPNEDL
VYAIGVHRYQRDWFFAHVNRRLEDNTYVPTTWKVLFNLKQVDRTRTYTLQLALASANGAE
LQVRINDEAAKHPHFTTHLIGYDNAIARHGIHGLYRLYSVNFLGNLLQPGKNIIFLKQTR
GKSPFNGVMYDYIRLEQPPPTN
NT seq
2049 nt
NT seq
+upstream
nt +downstream
nt
atgggcaagctggggaagagccaaaggcgacgaggatattattttgtggggtttcttgga
ttcatgtttcagctattcttgctgactgaatctaccgttcgtcgacaaaatataacatcg
agcaactcgcggccagtgcatctggatatattggatgatcaagttgtagtggacaatgga
ttggctaaattcactttctcaaagccagctggtatgattactggaataaattacaacggg
attaagaatatactagaacaaaggaacaaagaaactaacagagggtattgggatgttgtt
tggagcaagccagaagatcccggagatatttatgatgtgttacaagggacacattttaga
gtcgttgttgcaaatgaagatcaagtagagctgtcgtttacaaaaacatggattcctccg
gttaagggcactaaacgtcctcgtgatgacaatagccttccactcaatatagacaaaagg
tatatagtgctccgaggagtcccaggtttctactcatatgccacatttgaacgcttggaa
ggatggcgcgatatggtgctatatgaaggcaggattgcattcaagcttcaagaaaaattg
tttcgatacatggcagtgtcagatgaccgacaaagagtcatgccaacatttgaagaccgg
gaaagggggaaggcccttgcttataaagaagccgtgctagtgacagattcgattaaggac
acacatagtgtagaggtggatgacaaatatcaatattccgctgaaaacagggaaaataag
gtgcacggatggatatgctccaaccctgccaccgggttctggatgatcacacccagcagt
gagtttcgtgttgggggacctcttaagcaggacctcacttctcatgccggaccagtaact
ctgtcaatgttcttcagtgctcattatgctggaaagcccctagcacttacgtttaaagaa
ggggaaccctggaaaaaggtttttggcccagtttttatctatttaaactcaggcttggac
acggaaagtactgtttcattgtggcaagatgctaaagaacagatgttgatagaaactgag
agctggccatatgatttcccgcgctctggtgattattttcttgcaaataagcgtggcaca
cttagtggaaggttactggtacgagacaggtatacaagaatagagttgaaaacagctaag
tttgcgaatgtgggactggctctacctggagcagcaggctcctggcaaacagaaaacaag
ggttatcaattttggacacaagctgatgcaatggggtattttgtgataaaaaatgtcttg
cccggaacatataacttgtatgcttgggtgcctggacttatcggtgattacaaatatgca
tacaatattatcatcaaaccaggaggcattgtaaaattaggtaatattgtatatgttcct
ccaagaaatggccctacactatgggaaattggcatccctgatcgcacagcagctgagttt
tttgttcctcaacctatcacgactcttgaaaacacattatatgaggaggatactgcagag
gggtttaggcagtacggattatgggatcgttacactgatctatatcctaatgaagatcta
gtttacgctattggtgttcataggtatcaaagggactggttctttgctcatgttaatagg
agacttgaagataacacctatgtaccaacaacatggaaagttttatttaatttaaaacaa
gtggatcggaccagaacttacacattgcagctggcacttgcttctgccaatggagctgaa
ttacaagtccggatcaacgatgaagccgccaaacatcctcactttacgacacatcttata
ggctatgataatgcaattgcaagacatgggatccatggactataccgcttatacagtgtt
aattttttgggaaatcttttacaaccggggaaaaatataatatttcttaagcagacaaga
ggaaaaagtcctttcaatggagtcatgtatgattatatacgtttggaacagccaccgcca
acaaattaa
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