Daucus carota (carrot): 108203594
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Entry
108203594 CDS
T05350
Name
(RefSeq) coatomer subunit alpha-1
KO
K05236
coatomer subunit alpha
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
dcr04131
]
108203594
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dcr04147
]
108203594
Membrane trafficking [BR:
dcr04131
]
Endoplasmic reticulum (ER) - Golgi transport
Retrieval pathways
Coat protein complex I (COP-I)
108203594
Exosome [BR:
dcr04147
]
Exosomal proteins
Exosomal proteins of other body fluids (saliva and urine)
108203594
Exosomal proteins of bladder cancer cells
108203594
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
COPI_C
B-prop_COPA_B_2nd
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
WD40_CDC20-Fz
WDR55
Beta-prop_EML_2
TPR_COPA_B
Beta-prop_WDR36-Utp21_1st
EIF3I
WD40_Gbeta
Beta-prop_EML
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_TEP1_C
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WD40_MABP1-WDR62_1st
WD40_MABP1-WDR62_2nd
ANAPC4_WD40
Beta-prop_SCAP
Beta-prop_DCAF4
WD40_RFWD3
Beta-prop_WDR41
Beta-prop_SPT8
NBCH_WD40
Beta-prop_Aladin
Beta-prop_IFT122_1st
Beta-prop_RIG_2nd
Beta-prop_WDR19_1st
TPR_Epg5_2
Zn_ribbon_19
Motif
Other DBs
NCBI-GeneID:
108203594
NCBI-ProteinID:
XP_017228078
UniProt:
A0A166GFB3
LinkDB
All DBs
Position
1:23445797..23451399
Genome browser
AA seq
1216 aa
AA seq
DB search
MLTKFETKSNRVKGLSFHSKRPWILASLHSGVIQLWDYRMGTLIDRFDEHDGPVRGVHFH
KSQPLFVSGGDDYKIKVWNYKLHRCLFTLLGHLDYIRTVQFHHEHPWIVSASDDQTIRIW
NWQSRTCISVLTGHNHYVMCALFHPKDDLVVSASLDQTVRVWDIGALRKKSASPADDILR
LSQMNTDFFGGVDAVVKYVLEGHDRGVNWAAFHPSLPLIVSGADDRQVKLWRMNDTKAWE
VDTLRGHMNNVSCVLFHAKQDIIVSNSEDKSIRVWDATKRTAIQTFRREQDRFWILASHP
EMNLLAAGHDSGVIVFKLERERPAFSVSGDSMFYAKDRFLRFYEFLTQRETQVIPIRRPG
SASLNQSPRTLSYSPTENAILICSDMDGGSYELYIIPKDSISRGDTVQEAKRGIGGSAIF
VARNRFAVLDRTNNQVLVKNLKNETVKKSVLPIAADAIFYAGTGNLLCRAEDRVVIFDLQ
QRVVLGDLHTPFVKYIVWSNDMESVALLSKHAIVIASKKLVHQCTLHETIRVKSGGWDDN
GVFIYTTLNHIKYCLPNGDSGIIKTLDVPIYITKVSGNKIFCLDRDGKNRVIVIDAAEYI
FKLSLLRKKYEHVMSMIRNSQLCGQAMIAYLQQKGFPEVALHFVKDERTRFSLAIESGNI
QTAVAAAKEIDEKDHWYRLGVEALRQGNAGIVEYAYQRTKNFERLSFLYLITGNTEKLSK
MLKIAEVKNDVMGQFHNALYLGDVQERVKILENAGHLPLAYITASVHGLNEVAERLAAAL
GDNVPTLPTNKSPSLLIPPTPIVCAGDWPLLRVMRGIFEGGLDNIVQGDPAEDDEDMDAN
WGEALDVVDAEALENGELAAVIQDEEAAEENEEDGGWDLEDLDLPPEADTPKASVNSRVF
VAPTPGIAVSQIWTQRSSFAAEHAAAGNFDTAMRLLSRQLGIRNFVPLKSMFLDLHNGSH
SYIRALTSAPVLSVAVERGWTESSSPNVRGPPDLVFNFSQLEEKLKAGYKATTAGKFTEA
LRLFLTILHTIPLIVVDSRREVDEVKELIVIVKEYVLGLQMELKRKELKDDPIRQQELAA
YFTHCNLQLPHLRLALQNAMTVCFRAKNLNTAGNFARRLLETNPTNENQAKMARQVLQAA
EKNMKDASHLNYDFRNPFVVCGATYVPIYRGQKDVSCPYCSSRFVPAQDGQLCNVCDLAT
VGADASGLLCSPSQVR
NT seq
3651 nt
NT seq
+upstream
nt +downstream
nt
atgttgacgaaatttgaaacgaagagtaatagagtcaagggattgagttttcatagtaag
agaccgtggatccttgcgagtcttcacagtggtgtgattcagttatgggattatcgaatg
ggcacgctgattgataggtttgatgagcatgatgggcctgttcgcggtgttcattttcat
aaatcacagccgctttttgtttctggaggagatgattataaaattaaagtttggaactac
aagttgcatcggtgcttgtttactcttctcggacatcttgattatatccgcactgttcag
tttcatcatgagcatccttggattgtgagtgcaagtgatgaccagactattagaatttgg
aactggcagtcacgaacctgtatatctgtcttgactgggcacaaccattatgtgatgtgt
gctttattccaccctaaagatgaccttgttgtgtcggcatcacttgatcagactgttcgt
gtctgggatatcggtgcacttaggaagaagtcggcatctcctgctgatgatattctacgt
ctcagtcagatgaacaccgatttttttggtggagttgatgctgtggtcaagtatgtactg
gaaggtcatgaccgcggagtcaactgggctgcattccatcctagcttgcctcttattgtc
tcaggagctgatgatcgtcaagttaagctttggcgtatgaatgatacaaaggcctgggaa
gtggatacattgagaggtcacatgaataatgtttcatgtgtcctttttcatgccaagcag
gatatcattgtttccaactctgaggataagagcattcgtgtttgggacgctacaaaacgt
actgctatccaaacttttcgtcgtgaacaagatcgattttggattcttgcatctcatcca
gagatgaatttgcttgctgctggccacgacagtggtgtgattgttttcaagttggagaga
gaaaggcctgcattttcagtgagcggtgattctatgttttatgcaaaggatcgctttttg
cggttctatgagttcttaacacagagagaaacacaggtgattccaataagacgccctggc
tctgcaagtttgaatcagagtccacgaacactttcatacagtcctacagaaaatgcgata
cttatatgttcagacatggacggaggatcttatgagctatacatcataccgaaagatagc
attagtagaggagatacagtccaagaggcaaagagaggcattggtggatcggctatattt
gtggctcgaaatcggtttgctgtgcttgaccgaaccaacaatcaagtgttggtcaaaaac
ctcaagaatgagaccgtcaaaaaaagtgtcttgcctatagctgcagatgcaatattttat
gctggaacggggaatttgctttgtagagcagaggacagagtggttatatttgacctccag
caacgggttgttcttggtgatctgcatacaccctttgtgaagtatattgtctggtcaaat
gacatggaaagtgtcgccttacttagcaagcatgctattgtgattgctagtaagaagctt
gtacaccaatgcacccttcatgaaacaattcgagtaaagagtggtggttgggatgacaat
ggagtctttatttatacaacactgaatcacatcaaatactgcctaccaaatggagatagt
ggaataataaagacacttgatgttccaatttacataactaaagtttctggcaataagatt
ttttgcttggatcgtgatgggaagaacagggtgatagtgattgatgcagcagaatatata
ttcaaactgtccttgttgaggaagaaatatgaacatgttatgagcatgatcaggaattca
cagctttgtgggcaagcaatgattgcttatttgcagcagaaggggttccccgaagttgct
cttcattttgtgaaagatgagagaactcgttttagtttggcaatagagagtggtaatatt
cagactgcagttgctgcagccaaggaaattgatgagaaggatcactggtacagattaggg
gttgaagctctacgtcagggtaatgctggtatagttgaatatgcttaccagaggacgaaa
aactttgagagattatcttttctttatcttataactgggaatactgaaaagctgtccaag
atgcttaaaattgctgaagtcaagaatgatgtgatgggccaatttcataatgctctttat
cttggtgatgttcaggagcgtgtgaaaattttggaaaatgctgggcacttgccacttgct
tatattactgcttctgttcatggattgaatgaggtcgcagaaaggctagcagcggcattg
ggagataatgttccaacattgccaacaaacaaatcaccctcccttcttatccctcccact
ccaattgtttgtgctggagattggcccctgttaagagtcatgcgaggaattttcgagggt
gggctggacaatattgttcaaggcgatccagctgaggatgatgaagatatggatgccaac
tggggtgaagcattggatgtggttgatgcagaagctttggaaaatggagaattggctgca
gtgattcaggatgaagaagcagcggaagagaatgaggaggatggcggttgggatcttgag
gatttggacctccctcctgaagcagatactcccaaggcatctgtaaactctcgagtattt
gtggccccaactcctggtattgctgtaagccagatttggactcagagatcatcttttgca
gctgaacatgctgctgctggtaactttgacactgctatgcggttgttgagccgtcagttg
ggtatccgaaactttgttcctttgaaatcaatgttcctcgaccttcacaacggaagtcat
agttatatccgtgcacttacctctgctccagtgttatcagtggcagtggaacgagggtgg
acagaatcctctagccctaatgtaagaggtccaccagacctagtttttaatttctctcaa
ttggaagagaaattaaaggctggttacaaagcaacaacagctgggaaattcactgaagct
cttcggctatttcttactattctgcatactattcctttaatcgtagttgactcaagaagg
gaagttgatgaagttaaggaattgatagttatagtcaaagagtatgttttaggactgcag
atggagctaaaaagaaaggaacttaaagatgatcctatccgccaacaagagcttgctgca
tattttacccactgtaaccttcaactaccgcatttgaggctagctttgcagaatgcaatg
acggtttgctttagggctaaaaaccttaacacggctggtaactttgctagacgccttcta
gagaccaacccaacaaatgagaaccaagccaagatggccaggcaagttctgcaagctgct
gagaagaatatgaaagatgcgtctcatctgaactatgactttaggaatccttttgtggtt
tgtggagccacatatgttcctatttaccgaggacagaaagatgtgtcatgcccatactgt
agctccaggtttgtgccagcccaggatgggcagctttgtaatgtatgtgatcttgcaaca
gtcggtgctgatgcttcaggtttactctgctctccctcccaagtcagatga
DBGET
integrated database retrieval system
