Entry |
|
Name |
(RefSeq) ATP-dependent RNA helicase DBP2
|
KO |
|
Organism |
dcr Daucus carota (carrot)
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Pathway |
|
Brite |
KEGG Orthology (KO) [BR:dcr00001]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108203742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:dcr03041]
108203742
03009 Ribosome biogenesis [BR:dcr03009]
108203742
Enzymes [BR:dcr01000]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108203742
Spliceosome [BR:dcr03041]
Complex A
U1 snRNP components
U1 related factors
108203742
Complex B
108203742
Ribosome biogenesis [BR:dcr03009]
Eukaryotic type
Pre-60S particles
Helicases
108203742
|
SSDB |
|
Motif |
|
Other DBs |
|
LinkDB |
|
Position |
1:complement(56190786..56206570)
|
AA seq |
551 aa
MSYVPPHLRSSSSSSSATKTLEINGNNHYTNSFVSQSSNNNLYSSSTSSRRSSENLLLPP
DSVVPQWKPSDRVLALKTDQIEEVRLRLNVDVSISADSSPAPAPIESFMDMCLDSRIMRD
ISYHEYTTPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQSPVRRGDGP
LALVLAPTRELAQQIEKEVKAFSRSLESFRTAIVVGGTNIAEQRTELRSGVNIVVGTPGR
FIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQITEVMRNLPNKHQTLLFSATMPLEIE
ALAQEYLTDPVQVKVGKVSSPTANVSQILEKVLENEKIDRLLSLLVEEATQVERSGHSLP
LTIVFVERKTRCDEVAEALVAQGLHAVALHGGRTQSEREAALRDFRHGPTRILVATDVAS
RGLDVTGVAHVVNLDLPKTMEDYIHRIGRTGRAGSTGRASSFYTDRDMFLVAQIRKAISD
VQSGNTVAFATGKVARRKEREAVAAQKEARTALSKQPSIGSMSVNVEDRYKYMIAPAIVR
KEGSADDAWDD |
NT seq |
1656 nt +upstreamnt +downstreamnt
atgtcttatgtgcctcctcacctgagaagctcctcctcctcctcctccgccacaaaaacc
ctagaaatcaacggtaataatcactacacaaactcattcgtctcgcagtcgagcaacaac
aatttgtattcatcatcgacctcttctcgccgcagctccgagaacctcttgctgccgcct
gactctgtcgtcccccaatggaagccctccgaccgcgttctcgctctcaaaaccgaccag
atagaagaggtccgtctacgactaaatgttgatgtcagtatctctgctgattcttcacct
gcacctgcacccattgaatcttttatggatatgtgcttggactcgcgcataatgagagat
atttcctaccatgagtacactacacccacttctatacaagctcaggccatgcctgttgca
ctaagtggaagggatcttttgggttgtgcagaaacgggtagtgggaaaactgctgcattt
acaattcccatgatacagcattgcctagctcagtctcctgtacgacgtggtgatgggcct
ttggcattagtgctggcccctacaagagagcttgcacaacaaatagagaaagaggttaag
gctttcagtagatctttggaatccttcagaactgcaattgttgtaggtggaactaacata
gcagagcagaggactgagctacgttctggagtaaatatagtggttggtactcctggaaga
tttatcgatcatttacaacaaggaaacacttctctgtctagaatttcatatgttgttctg
gacgaggctgatagaatgcttgacatgggttttgaaccacaaataacagaggtgatgcgg
aatcttccaaacaaacatcaaactttgctttttagtgcaactatgccattggagattgaa
gctcttgcacaggaatacttaacagatccggtacaagtaaaggttggaaaagtgagtagc
cctacagcaaatgtatctcaaattttagagaaggttcttgaaaatgagaagattgatcga
cttctatctttgcttgttgaagaggcaactcaggtcgaaagatctggtcattcccttcct
ttgaccattgtgtttgtagaaagaaagactaggtgtgatgaagttgctgaagctttggta
gcacagggattgcatgcagttgcacttcatggtggccgtactcaaagtgaaagagaggca
gctcttcgtgattttaggcatggtccaacaagaatcttggttgcgaccgatgttgcatct
cgtggtttggatgtcacaggggttgcccatgtggttaatttagatcttccaaagaccatg
gaggactatatacatcggattgggaggaccggtcgtgcaggatcaactggccgagcttcg
tcattttacactgatcgtgatatgttccttgttgcccaaattagaaaagcaatatctgat
gttcagtctggcaatactgtggcttttgctaccgggaaggttgccagaaggaaagaaagg
gaagcagtagctgcccagaaagaagcaaggactgcactctccaagcaaccatcaataggt
tcaatgtctgtaaacgtagaggacagatataagtacatgattgccccagcaattgttaga
aaagaaggttcagctgatgatgcttgggatgattaa |