Daucus carota (carrot): 108203742
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Entry
108203742 CDS
T05350
Name
(RefSeq) ATP-dependent RNA helicase DBP2
KO
K12823
ATP-dependent RNA helicase DDX5/DBP2 [EC:
5.6.2.7
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108203742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
dcr03041
]
108203742
03009 Ribosome biogenesis [BR:
dcr03009
]
108203742
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108203742
Spliceosome [BR:
dcr03041
]
Complex A
U1 snRNP components
U1 related factors
108203742
Complex B
108203742
Ribosome biogenesis [BR:
dcr03009
]
Eukaryotic type
Pre-60S particles
Helicases
108203742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
SNF2-rel_dom
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-GeneID:
108203742
NCBI-ProteinID:
XP_017228393
UniProt:
A0AAF0WAK3
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All DBs
Position
1:complement(56190786..56206570)
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AA seq
551 aa
AA seq
DB search
MSYVPPHLRSSSSSSSATKTLEINGNNHYTNSFVSQSSNNNLYSSSTSSRRSSENLLLPP
DSVVPQWKPSDRVLALKTDQIEEVRLRLNVDVSISADSSPAPAPIESFMDMCLDSRIMRD
ISYHEYTTPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQSPVRRGDGP
LALVLAPTRELAQQIEKEVKAFSRSLESFRTAIVVGGTNIAEQRTELRSGVNIVVGTPGR
FIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQITEVMRNLPNKHQTLLFSATMPLEIE
ALAQEYLTDPVQVKVGKVSSPTANVSQILEKVLENEKIDRLLSLLVEEATQVERSGHSLP
LTIVFVERKTRCDEVAEALVAQGLHAVALHGGRTQSEREAALRDFRHGPTRILVATDVAS
RGLDVTGVAHVVNLDLPKTMEDYIHRIGRTGRAGSTGRASSFYTDRDMFLVAQIRKAISD
VQSGNTVAFATGKVARRKEREAVAAQKEARTALSKQPSIGSMSVNVEDRYKYMIAPAIVR
KEGSADDAWDD
NT seq
1656 nt
NT seq
+upstream
nt +downstream
nt
atgtcttatgtgcctcctcacctgagaagctcctcctcctcctcctccgccacaaaaacc
ctagaaatcaacggtaataatcactacacaaactcattcgtctcgcagtcgagcaacaac
aatttgtattcatcatcgacctcttctcgccgcagctccgagaacctcttgctgccgcct
gactctgtcgtcccccaatggaagccctccgaccgcgttctcgctctcaaaaccgaccag
atagaagaggtccgtctacgactaaatgttgatgtcagtatctctgctgattcttcacct
gcacctgcacccattgaatcttttatggatatgtgcttggactcgcgcataatgagagat
atttcctaccatgagtacactacacccacttctatacaagctcaggccatgcctgttgca
ctaagtggaagggatcttttgggttgtgcagaaacgggtagtgggaaaactgctgcattt
acaattcccatgatacagcattgcctagctcagtctcctgtacgacgtggtgatgggcct
ttggcattagtgctggcccctacaagagagcttgcacaacaaatagagaaagaggttaag
gctttcagtagatctttggaatccttcagaactgcaattgttgtaggtggaactaacata
gcagagcagaggactgagctacgttctggagtaaatatagtggttggtactcctggaaga
tttatcgatcatttacaacaaggaaacacttctctgtctagaatttcatatgttgttctg
gacgaggctgatagaatgcttgacatgggttttgaaccacaaataacagaggtgatgcgg
aatcttccaaacaaacatcaaactttgctttttagtgcaactatgccattggagattgaa
gctcttgcacaggaatacttaacagatccggtacaagtaaaggttggaaaagtgagtagc
cctacagcaaatgtatctcaaattttagagaaggttcttgaaaatgagaagattgatcga
cttctatctttgcttgttgaagaggcaactcaggtcgaaagatctggtcattcccttcct
ttgaccattgtgtttgtagaaagaaagactaggtgtgatgaagttgctgaagctttggta
gcacagggattgcatgcagttgcacttcatggtggccgtactcaaagtgaaagagaggca
gctcttcgtgattttaggcatggtccaacaagaatcttggttgcgaccgatgttgcatct
cgtggtttggatgtcacaggggttgcccatgtggttaatttagatcttccaaagaccatg
gaggactatatacatcggattgggaggaccggtcgtgcaggatcaactggccgagcttcg
tcattttacactgatcgtgatatgttccttgttgcccaaattagaaaagcaatatctgat
gttcagtctggcaatactgtggcttttgctaccgggaaggttgccagaaggaaagaaagg
gaagcagtagctgcccagaaagaagcaaggactgcactctccaagcaaccatcaataggt
tcaatgtctgtaaacgtagaggacagatataagtacatgattgccccagcaattgttaga
aaagaaggttcagctgatgatgcttgggatgattaa
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