KEGG   Daucus carota (carrot): 108203742
Entry
108203742         CDS       T05350                                 
Name
(RefSeq) ATP-dependent RNA helicase DBP2
  KO
K12823  ATP-dependent RNA helicase DDX5/DBP2 [EC:5.6.2.7]
Organism
dcr  Daucus carota (carrot)
Pathway
dcr03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:dcr00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    108203742
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:dcr03041]
    108203742
   03009 Ribosome biogenesis [BR:dcr03009]
    108203742
Enzymes [BR:dcr01000]
 5. Isomerases
  5.6  Isomerases altering macromolecular conformation
   5.6.2  Enzymes altering nucleic acid conformation
    5.6.2.7  DEAD-box RNA helicase
     108203742
Spliceosome [BR:dcr03041]
 Complex A
  U1 snRNP components
   U1 related factors
    108203742
 Complex B
    108203742
Ribosome biogenesis [BR:dcr03009]
 Eukaryotic type
  Pre-60S particles
   Helicases
    108203742
SSDB
Motif
Pfam: DEAD Helicase_C ResIII SNF2-rel_dom Cas3-like_C_2 CMS1
Other DBs
NCBI-GeneID: 108203742
NCBI-ProteinID: XP_017228393
UniProt: A0AAF0WAK3
LinkDB
Position
1:complement(56190786..56206570)
AA seq 551 aa
MSYVPPHLRSSSSSSSATKTLEINGNNHYTNSFVSQSSNNNLYSSSTSSRRSSENLLLPP
DSVVPQWKPSDRVLALKTDQIEEVRLRLNVDVSISADSSPAPAPIESFMDMCLDSRIMRD
ISYHEYTTPTSIQAQAMPVALSGRDLLGCAETGSGKTAAFTIPMIQHCLAQSPVRRGDGP
LALVLAPTRELAQQIEKEVKAFSRSLESFRTAIVVGGTNIAEQRTELRSGVNIVVGTPGR
FIDHLQQGNTSLSRISYVVLDEADRMLDMGFEPQITEVMRNLPNKHQTLLFSATMPLEIE
ALAQEYLTDPVQVKVGKVSSPTANVSQILEKVLENEKIDRLLSLLVEEATQVERSGHSLP
LTIVFVERKTRCDEVAEALVAQGLHAVALHGGRTQSEREAALRDFRHGPTRILVATDVAS
RGLDVTGVAHVVNLDLPKTMEDYIHRIGRTGRAGSTGRASSFYTDRDMFLVAQIRKAISD
VQSGNTVAFATGKVARRKEREAVAAQKEARTALSKQPSIGSMSVNVEDRYKYMIAPAIVR
KEGSADDAWDD
NT seq 1656 nt   +upstreamnt  +downstreamnt
atgtcttatgtgcctcctcacctgagaagctcctcctcctcctcctccgccacaaaaacc
ctagaaatcaacggtaataatcactacacaaactcattcgtctcgcagtcgagcaacaac
aatttgtattcatcatcgacctcttctcgccgcagctccgagaacctcttgctgccgcct
gactctgtcgtcccccaatggaagccctccgaccgcgttctcgctctcaaaaccgaccag
atagaagaggtccgtctacgactaaatgttgatgtcagtatctctgctgattcttcacct
gcacctgcacccattgaatcttttatggatatgtgcttggactcgcgcataatgagagat
atttcctaccatgagtacactacacccacttctatacaagctcaggccatgcctgttgca
ctaagtggaagggatcttttgggttgtgcagaaacgggtagtgggaaaactgctgcattt
acaattcccatgatacagcattgcctagctcagtctcctgtacgacgtggtgatgggcct
ttggcattagtgctggcccctacaagagagcttgcacaacaaatagagaaagaggttaag
gctttcagtagatctttggaatccttcagaactgcaattgttgtaggtggaactaacata
gcagagcagaggactgagctacgttctggagtaaatatagtggttggtactcctggaaga
tttatcgatcatttacaacaaggaaacacttctctgtctagaatttcatatgttgttctg
gacgaggctgatagaatgcttgacatgggttttgaaccacaaataacagaggtgatgcgg
aatcttccaaacaaacatcaaactttgctttttagtgcaactatgccattggagattgaa
gctcttgcacaggaatacttaacagatccggtacaagtaaaggttggaaaagtgagtagc
cctacagcaaatgtatctcaaattttagagaaggttcttgaaaatgagaagattgatcga
cttctatctttgcttgttgaagaggcaactcaggtcgaaagatctggtcattcccttcct
ttgaccattgtgtttgtagaaagaaagactaggtgtgatgaagttgctgaagctttggta
gcacagggattgcatgcagttgcacttcatggtggccgtactcaaagtgaaagagaggca
gctcttcgtgattttaggcatggtccaacaagaatcttggttgcgaccgatgttgcatct
cgtggtttggatgtcacaggggttgcccatgtggttaatttagatcttccaaagaccatg
gaggactatatacatcggattgggaggaccggtcgtgcaggatcaactggccgagcttcg
tcattttacactgatcgtgatatgttccttgttgcccaaattagaaaagcaatatctgat
gttcagtctggcaatactgtggcttttgctaccgggaaggttgccagaaggaaagaaagg
gaagcagtagctgcccagaaagaagcaaggactgcactctccaagcaaccatcaataggt
tcaatgtctgtaaacgtagaggacagatataagtacatgattgccccagcaattgttaga
aaagaaggttcagctgatgatgcttgggatgattaa

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