Daucus carota (carrot): 108204225
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Entry
108204225 CDS
T05350
Name
(RefSeq) DNA-directed RNA polymerase II subunit RPB2
KO
K03010
DNA-directed RNA polymerase II subunit RPB2 [EC:
2.7.7.6
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03020
RNA polymerase
dcr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
108204225
09124 Replication and repair
03420 Nucleotide excision repair
108204225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108204225
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108204225
Enzymes [BR:
dcr01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
108204225
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
RNA polymerase II
Core subunits
108204225
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase II complex
108204225
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb2_6
RNA_pol_Rpb2_1
RNA_pol_Rpb2_2
RNA_pol_Rpb2_7
RNA_pol_Rpb2_3
RNA_pol_Rpb2_4
RNA_pol_Rpb2_5
Zn_ribbon_RPB9
Motif
Other DBs
NCBI-GeneID:
108204225
NCBI-ProteinID:
XP_017229043
UniProt:
A0A166IRV6
LinkDB
All DBs
Position
1:49604906..49613623
Genome browser
AA seq
1192 aa
AA seq
DB search
MDMEEEYDPAYNEDEGEDITQEDAWTVISAYFDEKGLVRQQLDSFDEFIQNTMQEIVDES
ADIEIRPESQHNPGHQNDFAETIYKISFGQIFLSKPMMTESDGETATLFPKAARLRNLTY
SAPLYADVSKRVIKKGHDGEEVTETQDFNKVFIGKVPIMLRSSYCTLYQNNEKDLTELGE
CPYDQGGYFIINGSEKVLIAQEKMSTNHVYVFKKRQPNKYAYVGEVRSMAESQNRPPSTM
FVRMLSRTSAKGGSSGQYIRATLPYIRTEIPIIIVFRALGFVADKDILEHICYDFADTQM
MELLRPSLEEAFVIQNQQVALDYIGKRGATVGVTREKRIKYAKEILQKEMLPHVGVGEYC
ETKKAYYFGYIIHRLLLCALGRRAEDDRDHYGNKRMDLAGPLLGGLFRMLFRKLTRDVRG
YVQKCVDNGKDVNLQFAIKAKTITSGLKYSLATGNWGQANAAGTRAGVSQVLNRLTYAST
LSHLRRLNSPIGREGKLAKPRQLHNSQWGMMCPAETPEGQACGLVKNLALMVYVTVGSAA
YPILEFLEEWGTENFEEISPAVITQATKIFVNGCWVGIHRDPDMLVRTLRRLRRRVDVNT
EVGVVRDIRLKELRIYTDYGRCSRPLFIVEKQRLLIRRKDIEALQQKESPEDGGWHDLVA
KGFIEYIDTEEEETTMISMTINDLRSARENPEEAYSDTYTHCEIHPSLILGVCASIIPFP
DHNQSPRNTYQSAMGKQAMGIYVTNFQFRMDTLAYVLYYPQKPLVTTRAMEHLHFRQLPA
GINAIVAIACYSGYNQEDSVIMNQSSIDRGFFRSLFFRSYRDEEKKMGTLVKEDFGRPDR
ANTMGMRHGSYDKLDDDGLAPPGTRCSGEDVIIGKTTPIAQDDAVQGQAASRYTRRDHST
SLRHSETGMVDQVLLTTNADGLRFVKVRVRSVRIPQIGDKFSSRHGQKGTVGMTYTQEDM
PWTVEGITPDIIVNPHAIPSRMTIGQLIECIMGKVAAHMGKEGDATPFTDVTVDNISKAL
HKCGYQMRGFETMYNGHTGRRLTAMIFLGPTYYQRLKHMVDDKIHSRGRGPVQILTRQPA
EGRSRDGGLRFGEMERDCMIAHGAAHFLKERLFDQSDAYRVHVCEKCGLVAIANLKKNSF
ECRSCKNKTDIVQVHIPYACKLLFQELMSMAIAPRMLTKDVKLAKDLKKRGA
NT seq
3579 nt
NT seq
+upstream
nt +downstream
nt
atggacatggaagaagagtatgatccagcttacaacgaagacgaaggcgaggacataacg
caggaggatgcgtggactgtaatcagcgcgtatttcgatgagaaaggcctggttcgacag
caactcgactcgttcgatgagtttattcagaacacgatgcaggaaatcgttgatgagtcg
gctgatatcgagattcgccccgagtcgcagcataatcctggtcatcagaacgatttcgct
gagactatatataagattagttttggtcagatatttctcagtaagccgatgatgacagaa
tctgacggagaaacagcaactttatttccgaaagctgcaagactaaggaatctcacatac
tcggctcccttatatgccgatgtctccaagagagtcattaaaaagggacatgacggtgaa
gaagttactgaaacacaggactttaacaaagtttttattgggaaggtgcctataatgctt
aggtctagctactgtactctgtatcagaacaacgagaaggatttaactgaattgggtgag
tgcccctatgatcagggtggctatttcatcatcaatggcagtgagaaagttttgattgct
caggagaagatgagcaccaatcatgtctatgtatttaaaaaaaggcaacctaacaagtat
gcctatgtcggagaagtgcgctctatggcagaatcccagaataggcctccgagtacaatg
tttgttcggatgctttcgaggactagtgcgaaagggggctcctcgggacagtatattcgt
gcaacacttccatacattcgtactgagattcctatcataattgtctttcgggcattagga
tttgttgcggacaaagatatattagaacatatatgttatgactttgctgatacccaaatg
atggaattattgaggccttccttggaggaagcctttgttattcaaaatcaacaggtggca
ctcgattacattgggaaaagaggagctactgttggtgtaactagggaaaagcgtatcaag
tatgctaaggaaatcctgcaaaaggagatgcttcctcatgttggggttggagaatattgt
gaaacaaagaaagcatactattttgggtatattattcaccgccttctactttgtgccctt
ggccgaagagcggaggacgatagggatcattacggcaataagaggatggatcttgctgga
cctttgctgggtggtcttttccggatgttgttcagaaagttgacgagggatgttagaggt
tatgtgcaaaagtgcgttgataacgggaaagacgtgaacctgcagtttgccatcaaagca
aaaacaattactagtggtcttaaatactcactcgctactgggaactggggacaggcaaat
gcagctggtacaagagctggtgtgtctcaggtgttgaatcgcctgacctatgcatcaact
ttatcgcatttgagaagattaaattctccaattggacgtgaagggaagcttgcaaaacct
cggcaattgcacaactcacagtggggaatgatgtgccctgcagagacacctgaaggacaa
gcatgtggactggtaaaaaatctggctttgatggtgtacgtaacagttggatcagcagca
tatccaattctagaatttttagaagaatggggcacagagaattttgaggaaatttcccct
gctgtgattacccaagccacaaagatttttgtcaacgggtgctgggtgggtattcaccgt
gatcctgacatgttggtgagaactctaaggcgactgaggagacgggttgatgtcaacacc
gaggttggagtagttcgagatattcgtttaaaagaacttcgcatttatactgattatggt
cgttgcagtcgtccgctattcattgtggagaagcaaaggcttcttattagaagaaaggac
attgaagcattgcaacagaaggaaagcccagaagatggtggatggcatgatcttgttgcc
aaaggatttatagaatacatcgacaccgaagaagaagaaactactatgatttccatgacc
atcaatgatcttagaagtgcaagggaaaatccagaggaggcttattctgatacttatacc
cactgtgaaatccatccatcattgattttaggtgtttgtgcttctattataccctttccg
gatcataaccagtctccacgtaacacatatcagtcagctatgggtaaacaagcaatgggg
atttatgtcacaaattttcagttccgaatggatacattggcctatgttctatactatccc
cagaagcctcttgttacaaccagagctatggagcatttacacttcaggcaacttccagct
ggcattaatgccattgttgctattgcctgctactctgggtataatcaagaagattctgtc
attatgaaccaatcatcaatagatcgtggatttttccgatcactattcttccggtcatac
agggatgaggagaagaagatgggaacgcttgttaaagaagactttggccgaccagataga
gctaataccatggggatgagacatggctcatatgataagttggatgatgatggtcttgct
cctccgggaacaagatgttctggtgaggatgttattataggaaagactactcctattgct
caggatgatgctgttcaggggcaagctgcatcgaggtacacgcgtcgtgatcatagcaca
agtttacgtcacagtgaaacagggatggttgatcaggtactacttacaacgaatgctgat
ggtttaagatttgtgaaagtaagggtaagatcagtgaggatacctcaaattggagataaa
tttagcagtaggcatggtcagaaaggaacagttggcatgacttacacacaagaagatatg
ccttggactgtagaaggtattaccccagatattattgtgaatccacatgccattccgtct
cggatgacaattggccagcttatcgagtgcatcatgggcaaagttgctgctcacatgggg
aaggaaggagatgccacaccatttacggatgttacggtggataatattagtaaagctctt
cacaagtgtggctatcaaatgcgtggctttgaaacaatgtataatggccacactgggagg
cgtctaacagccatgattttcctgggccctacttactaccaaagattgaagcatatggtt
gatgataagatccattcccgtggacgaggccctgtacaaatcctcacgaggcagcctgct
gagggacgatcacgagatggtggtcttcgatttggagaaatggaacgggattgcatgatt
gcgcatggtgctgctcatttcctgaaagaaaggctgttcgatcagagtgatgcttacagg
gttcatgtctgtgagaaatgtggattggtagcaattgcaaacttgaagaagaattcattt
gagtgcaggagttgcaagaacaagactgatattgtgcaggttcacattccttatgcatgc
aagcttcttttccaagagttgatgtctatggcgattgcacccaggatgcttactaaagat
gtgaaattggcaaaagacctgaagaagaggggagcctga
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integrated database retrieval system
