Daucus carota (carrot): 108204286
Help
Entry
108204286 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108204286 isoform X1
KO
K12875
apoptotic chromatin condensation inducer in the nucleus
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03013
Nucleocytoplasmic transport
dcr03015
mRNA surveillance pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108204286
09122 Translation
03013 Nucleocytoplasmic transport
108204286
03015 mRNA surveillance pathway
108204286
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108204286
03041 Spliceosome [BR:
dcr03041
]
108204286
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
EJC complex
108204286
Spliceosome [BR:
dcr03041
]
Complex C
Other components
EJC/TREX
108204286
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RSB_motif
SAP
Motif
Other DBs
NCBI-GeneID:
108204286
NCBI-ProteinID:
XP_017229129
LinkDB
All DBs
Position
1:complement(8225967..8232719)
Genome browser
AA seq
748 aa
AA seq
DB search
MSSYPVLYDKPIDQWKVTELKEELKRRRLTTKGLKDDLIRRLDESLQMEIEIANKSAGKG
LAFHPEPVQYQDASVVAGADEKSSAIFNKSGKDTELNSNVTEPNVDVNMGLMAQEPVVEV
DTLEPVTIAETAMESIVQETTLDMTVQVTTVETKLKSGGHELQNNGAQSQSEALDIQMQD
EKLDPSHELAKLSSSDLETQVFEVNKVKSDSISTDNVPVNEKIEDLNIQPQNEESNPHQE
EANPNSFALETQVYEVSKVTSDSISTDNISINEKLELKDNIIAADVKLEFDVKHIRQEPS
SGHVGLDDGGLQPMDVKGPQENEVKFEVTGTNADDSNLEKKNHSGDVEFSKTSHLDRSSG
DNSIEDGILESKQTESISLFVESSDKIERREVTVAREQVPVVTMVDDTRTDGKTEQKNVP
DVASTKRKPHADQGTVGNFDTAKKQRRWNNEGLKVLEPNNDNASPSITPRGTFQSNAKHT
ILRPDPMASVETPKERVVPPSSRSPTSALRIDRFLRPFTLKAVQELLGKTGTVTKFWMDH
IKTHCYVNFSSIEEAIETRNAVYNLQWPANGGRLLVAEFVEPQEVQMRIEAPHSPAASVN
TVPILPAVPTPMQSQPYPRVQVLRKAPPPLPVLPRPPPTVSNPLAGRERGLHPPPPTVSN
SPAARERALPPPPPPPVSNPSAAREQDLSPPPLPERVMVPEKVDPPVVTLDDLFRKTRAT
PRIYYLPLSDEQVKAKENAHGKPSSSRD
NT seq
2247 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtcgtatcctgttctgtatgataagccaattgatcaatggaaagtcactgagcta
aaagaagaactcaagaggcggagattgacaacgaaggggttaaaagatgatttgattagg
cgcctggatgaatctcttcagatggaaattgaaattgctaacaaaagtgctggtaaaggt
ttggcttttcatcctgaacctgttcagtatcaagacgcttcagtagtggctggagctgat
gagaaatctagtgctatttttaataagagtggtaaggacacagagctgaatagtaatgta
actgagccgaatgttgatgtcaatatggggttgatggctcaagaaccagttgtagaagtg
gataccttggaacccgtcactattgctgaaactgctatggagtctattgttcaggaaaca
actttggacatgactgttcaggtgactactgtggaaaccaaacttaaatctgggggccat
gagttacagaacaacggagctcagagccagagtgaggctttagatatccaaatgcaggac
gagaagttagatccttcacatgagctcgccaaactcagttcatctgatcttgaaacccag
gtatttgaggtcaacaaagtaaaatctgattctatttctactgataatgtcccggttaat
gaaaaaattgaggatctgaacatccaaccgcagaacgaggagtcaaatcctcatcaagag
gaggccaatcccaactcctttgctcttgaaacccaggtatatgaggtcagcaaagtaaca
tctgattctatttctactgataacatttcaattaatgaaaaattagaactaaaggataat
ataattgctgctgatgtcaaattagagtttgatgttaagcatattaggcaagagccatca
tccggccatgttggcctggatgatggcggtttacagccaatggatgtcaaagggccacaa
gaaaatgaagttaaatttgaagttactggaactaatgctgatgattcaaatctagagaag
aaaaatcatagtggtgatgtggagttctcaaaaacgtcacacttagatcgaagttctggg
gacaattcaattgaggatggtatattagagagtaagcagacagagtcaatatcgttattt
gttgaatcaagtgataagatagagaggagggaggtgactgtagcgagagaacaagttcct
gttgtaactatggttgatgatactaggactgatggaaaaactgagcagaaaaatgttcct
gacgttgcatccacaaaacgaaaacctcatgcagaccaaggaacagtagggaattttgat
actgcaaaaaagcagcgcaggtggaacaatgaaggacttaaagttcttgaaccaaataat
gacaatgcgtcaccatctataacaccaaggggtacatttcagtcaaatgccaaacatact
attttgagacctgaccctatggccagtgttgagacacctaaagagcgtgtcgttccacca
tcgtcaaggtcaccgacatctgctcttaggattgatcgttttttgcgtccttttactttg
aaagctgtgcaagaacttcttggaaaaacaggcactgtcacgaaattctggatggatcat
atcaaaactcactgctacgtcaatttttcatccattgaggaagcaatagagacccgaaat
gctgtatacaaccttcaatggccagcaaatggaggtcgccttttagttgccgagtttgtt
gaacctcaggaagtgcaaatgagaattgaggctcctcactctccagctgcttctgttaat
acagttcctatcctgcctgctgttcctacccctatgcagtcacagccatatccccgtgtg
caggtgctgaggaaggcacctccacctctgcctgttctcccccggccaccaccgacagtg
tccaatccactagcaggaagggagcggggtctccatccgccaccaccaacagtgtccaat
tcaccagcagcaagggagcgggctcttcctccaccaccacctccaccagtgtccaatcca
tcagcagcaagagaacaggatctctctccacccccactccccgaaagagtcatggtccct
gaaaaagttgacccgcccgttgtcactcttgatgatctctttaggaagaccagggcaact
cctcgtatctattacttaccgttgtctgacgaacaagtaaaagccaaggaaaatgcccat
ggaaagccatctagcagcagggactag
DBGET
integrated database retrieval system
