Daucus carota (carrot): 108204310
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Entry
108204310 CDS
T05350
Name
(RefSeq) probable pectate lyase 8
KO
K01728
pectate lyase [EC:
4.2.2.2
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr00040
Pentose and glucuronate interconversions
dcr01100
Metabolic pathways
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
108204310
Enzymes [BR:
dcr01000
]
4. Lyases
4.2 Carbon-oxygen lyases
4.2.2 Acting on polysaccharides
4.2.2.2 pectate lyase
108204310
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Gene cluster
GFIT
Motif
Pfam:
Pectate_lyase_4
Beta_helix
NosD
Motif
Other DBs
NCBI-GeneID:
108204310
NCBI-ProteinID:
XP_017229172
UniProt:
A0A162BAM1
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Position
1:complement(55507410..55511444)
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AA seq
448 aa
AA seq
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MAESIRRLLPLCLLLLLMFVSVKAALKTDDEIIPNSRAGENTQLQSSSNNTSMATDRVNE
DGEIRHEHAVDDPEAIATMVNMAIRNSTERRKLGFFSCGTGNPIDDCWRCDRNWQKNRKR
LADCPIGFGRSAIGGRDGKYYVVTDPNDDDAVNPKPGTLRYAVIQDEPLWIIFKRSMVIT
LKQELIMNSFKTIDGRGHSIHIANGGCITIQFVTNVIIHGLNIHDCKRTGNAMVRSSPSH
YGWRTLADGDAISIFGSSHIWVDHNSLSNCPDGLVDAVMGSTAITISNNYFTHHNEVILL
GHSDSYTRDKVMQVTIAYNHFGEGLIQRMPRCRHGYFHVVNNDYTHWEMYAIGGSGDPTI
NSQGNRYLAPNNPFAKEVTKRLEVGEWKHWNWRSEGDLMLNGAYFIASGTGSGASYARAS
SLGAKSASVIGSITSGAGALNCRRGRQC
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atggcagaatctatccgaagattgctccctttgtgtttgttgttgctgttgatgtttgtc
agtgtaaaggctgctctcaagactgatgatgaaatcattccaaactcaagagctggagaa
aacactcagttgcagagttcaagcaacaacacatcaatggctactgatagagtaaatgaa
gatggtgaaatcaggcacgagcatgcggtggatgatcctgaggccattgctacaatggtt
aacatggctattcgaaatagcacagagaggaggaagttgggtttcttttcatgtggaacg
ggtaatcctatcgatgactgctggcgttgcgaccgcaactggcaaaaaaaccgcaagcgc
ctagctgactgcccgattggttttggacgcagcgccattggtggccgcgatggcaagtac
tacgttgtcacggacccgaatgacgatgacgctgtgaatcctaagccaggcactctgcgg
tatgctgttattcaggacgagcctctgtggatcatctttaaaagaagcatggtgatcaca
ttaaagcaggaattgattatgaacagctttaagactatcgatggtcgcggacattccatc
catattgctaatggaggatgcattactattcagtttgtgactaatgttattatccatgga
cttaatattcatgattgcaagcggactggtaatgctatggtgaggagttctccgagtcat
tatggttggaggacgctggctgatggcgatgccatttccatcttcgggtcaagccacatt
tgggttgatcacaattcgctctccaattgtccggatggccttgttgatgctgttatggga
tcaactgcaattaccatctcgaataattattttactcaccacaatgaggtgattttgtta
ggacacagcgattcatataccagagacaaggttatgcaggtgactattgcttataaccat
tttggtgagggccttatccagagaatgccaagatgtaggcacgggtatttccatgtagtg
aacaatgactatactcactgggaaatgtacgcgattggagggagcggtgatcccacaatt
aacagtcagggcaaccgatatcttgctcctaacaacccttttgccaaagaggtgaccaag
agacttgaggtaggcgaatggaagcactggaactggagatcagaaggcgatctgatgctc
aacggggcttacttcattgcatccggaactggatcaggagctagctatgcaagagcatca
agcctaggtgctaaatccgcttctgtgatcggttccatcacctctggtgcaggcgctctc
aattgtcgcagaggaagacaatgctaa
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