Daucus carota (carrot): 108204461
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Entry
108204461 CDS
T05350
Name
(RefSeq) SWI/SNF complex subunit SWI3C
KO
K11649
SWI/SNF-related matrix-associated actin-dependent regulator of chromatin subfamily C
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03082
ATP-dependent chromatin remodeling
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09126 Chromosome
03082 ATP-dependent chromatin remodeling
108204461
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108204461
03036 Chromosome and associated proteins [BR:
dcr03036
]
108204461
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
BAF/PBAF complex
108204461
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Chromatin remodeling factors
BAF complex
108204461
PBAF complex
108204461
GBAF(ncBAF) complex
108204461
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SWIRM-assoc_1
SWIRM
Myb_DNA-binding
Myb_DNA-bind_6
UPF0167
Myb_DNA-bind_7
Motif
Other DBs
NCBI-GeneID:
108204461
NCBI-ProteinID:
XP_017229404
UniProt:
A0A166IA33
LinkDB
All DBs
Position
1:45441588..45452456
Genome browser
AA seq
733 aa
AA seq
DB search
MPASTSETRNRWKKRKRDSLVSRKSNSQPEDEPEEEEDEEIDPELDENHPNPNPNSQLSR
KPVALVPPEVLSESAIRVSEFPPVVRHKVQRPHASVVAILGLERGNESCRQNCVSLENVS
YGQLQALSAMTKESLVDSEKGEGSVVITPPKIMEGRGVVKRFGLGRVLVVPMHADWFSPS
TVHRLERQVVPQYFSGKSVDRTPEKYMECRNYIVAKYMEYPDRRLSVSDCDGLVAGADSD
DMARIYRFLDHWGIINYCVPALNRETQNDTLCLNEETNGELRVPLNHLKSIDSLIQFDKP
RCQLRAADVNSELGSHVHGDSDLDDKIRERLSENRCSCCSRPLPIIYYQSQKEVDVLLCM
ECFHEGRFVAGHSSLDFTRFDSGNDYGDPDGVNWSDQETLLLLEAMEIYGENWNEIAEHV
KTKSKAQCILHFLRMPMDDSSMENVEVPQNPSSVKLPNDEGDRPHLNSNGHPAGSSVQVP
NAESRVPFANYANPVMALVAFLASAVGPRVAAACAHASLAELSKDEETSASGHSNITNSS
QLKEGILLSDAKLRAASKAGLSAAATKAKLFADHEEREIQRLSANIINHQLKRLELKLKQ
FTEVETMLMKECEQVERVKQRIAAERAAFISTHFGSGGGVSRPTSLSAISPAMIQNNAGN
TRQQIVSDGPSQPYMGYTNSRPVHPHVSPMSQQQTYGLGPRMPLSAINPSSASPNSTTRP
MSRPVSGARSGLD
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atgccagcttccacatcagagacgaggaacagatggaagaagcgcaagcgagactcgcta
gtctcgcgaaaatcgaattcgcaacccgaagacgagcccgaggaggaagaagacgaagaa
atcgaccccgaattggacgagaaccacccgaacccaaaccctaacagtcaattgagtcga
aaaccagttgctctggtgccacctgaggtgttatcggagtctgcgattcgagtatcggag
tttccgcctgtggtgaggcacaaggtgcagaggcctcacgcgtcggtggtggcaattttg
gggttggagagagggaatgagagctgtaggcagaattgcgtaagtttggagaatgtttcg
tatgggcagttgcaggctttgtcggcgatgactaaggagagtttggttgattcggagaaa
ggggagggatctgttgtgattacgcctcccaagattatggaggggagaggggttgttaaa
cggttcgggcttgggagggttcttgtggtgcctatgcacgcagactggttttcccctagt
acggtgcacagattagagcgacaggttgtgccacaatatttctctgggaagtcagtggac
cggacacctgaaaagtatatggaatgccgaaactatattgttgccaagtacatggaatac
ccagataggagattgtcggtgtctgattgtgatgggttggtagctggtgctgacagtgat
gacatggctcgaatttaccgctttcttgatcactggggtataattaattactgtgttcct
gctctgaatcgtgaaacacagaatgataccctttgccttaatgaggaaacaaatggggaa
cttcgtgtgccattgaatcatctaaaatccattgatagcttaatccaatttgataagccc
agatgtcaactgcgtgcagcagatgtgaattcagaactaggaagtcatgttcatggcgac
tccgacttggatgacaaaatacgagaacgattatcagaaaataggtgcagttgctgttct
cggcctcttccaatcatttattatcaatcacagaaagaggttgatgtactattgtgcatg
gagtgcttccatgaaggaagatttgtggctggtcactcaagcctggattttactaggttt
gattctggtaacgattatggagatcctgatggagtgaattggtctgatcaggaaacccta
ctgcttcttgaggcaatggaaatttatggtgaaaactggaatgaaattgcagagcatgtt
aaaacaaagtcaaaagcacaatgcatccttcactttctgcgcatgcccatggatgattcc
tcaatggaaaacgttgaagtaccgcagaatccaagttctgtgaaattgccgaatgatgag
ggtgacagaccacatctgaactcaaatggccaccctgcaggatctagtgtacaagtccct
aatgctgagagccgagttccctttgcaaactatgcaaatcctgtaatggccctggttgcc
tttctagcctctgcagtcggaccaagagttgctgcagcctgcgctcatgcctccttggca
gaactttcaaaagatgaagagacttctgcttctggtcatagtaatatcacaaactcaagt
caactaaaagagggtattctgttatctgatgcaaaactcagagctgcttccaaagcaggt
ctatctgctgcagcaacaaaggcaaagctattcgccgatcacgaagagcgcgaaattcaa
aggctttctgctaatatcataaatcatcagttaaaaaggttggaactcaagctaaagcaa
tttacagaagtggagaccatgctaatgaaagaatgtgaacaagtggagagagtaaagcag
agaattgctgctgaaagggctgcttttatctcaacacattttggatcaggaggtggtgtg
tctcgacctacaagtctatcagcaattagtcctgccatgattcagaataatgctggaaat
acgaggcaacaaatcgtctcagacgggccttcacagccatatatgggttataccaatagt
cgacctgtccatcctcatgtatcacccatgtcgcagcagcagacatatggacttggcccc
aggatgcccctctcagccataaatccgtcttcggcttctcctaatagcacaactcgccca
atgtcaagacctgtatcaggggctagatctggtttagattaa
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