Daucus carota (carrot): 108204507
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Entry
108204507 CDS
T05350
Name
(RefSeq) SNF2 domain-containing protein CLASSY 3
KO
K10875
DNA repair and recombination protein RAD54 and RAD54-like protein [EC:5.6.2.-]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
108204507
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
dcr03400
]
108204507
DNA repair and recombination proteins [BR:
dcr03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
Rad54 family proteins
108204507
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
SNF2-rel_dom
Helicase_C
ResIII
Motif
Other DBs
NCBI-GeneID:
108204507
NCBI-ProteinID:
XP_017229477
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All DBs
Position
1:complement(38113239..38118325)
Genome browser
AA seq
1101 aa
AA seq
DB search
MESYYKLPVAKRTRSGSDRFIEEEFKKLKSSGRQVAVEADVVVPVVLVEDDDEGLSGNAR
GRGGDGRECKGKSEKGKELDKDSESDCDVIVVGERDLCKDDDDDSDVVEVLAFDKGEERE
IERVVDGGGGDDVEEEERIDSLSSEDASEESNEDTNDESDESFRDEGFVGSDHAESSDDS
SSYAKSEDEGDNDSDDGCGTDRRIEGKNGFKRKGREKGKFAEGSGRENDRGEKETVDGRF
EDKVETFELEESSESDDEDGNSSCHFDDSDEENDSSKSETSVGRKNGKRIVKSGFLKRTQ
NVADRLRSDALITSRSKKVSLRKDGSQIQPLVETDDKSRDIYGGNRRKNLKMTTGRNADE
DIDPVKAFCAFFAGKREGLKKIEKEEIKHKFWFPEKKPVEKSAFDAELDRLFEDLNTALT
CEDIGSTQLEVDNGDHCKMQSDCNRDKHDLVLDEQIGLVCKYCSHVSQEIRHILPTFSTS
DPQSRRRRHFVQPECPLFSDYFQGMVSERHDYDDYNTIGSVWDLVPGVRSSMYEHQREGF
EFIWKNLAGGIMIDELEKPLSSSGSGCIISHAPGTGKTRLTIVFLQSFMRMYPDSRPVII
APKSMLLTWEEEFKKWNINIPFHNMDNLEFSGQENSAAVKISRMGGHNRNNKTLARLVKL
YSWKRDKSILGITYALFDKLVSAETSNAECDPSEELMGNVLLQLPSIIVLDEGHNPRNDQ
SRIYNSLLDVETERRIILSGTPFQNNFVELYNTLRLVSPKFDSKSSKFDDTLEKKLRKIS
KELKSNWSGRKLMELKHMISPFVHVHKGKIIQERCPRLKDALIRLQPTDLQEELIAALKT
KDHKNGHFEIAHEISLVSVHPSLLPKQCFRLHQFSSYKDKLQRLKKDPYSGAKTKFVIEL
CRLSVALKERVLIFGQFIKPLKLIKKQLQSYFGWTEGREVLYMDGKLEAKQRQSSISALN
DPKSKSRVLLASIKACSEGIHLVGASRVVLLDVVWNPSVERQAISRAYRIGQTKIVYTYH
LIAEDMEVRKYKVQTAKDRLSEMLFSSKDTDSLQKNSPDMVSEDRILQEMYQQNDKLGGL
FKQILYQPKESDLIDTFDVVA
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atggagtcctattataaattgcctgttgctaagagaactaggtcaggtagtgataggttt
atagaggaggaatttaagaaacttaaaagttctggccgccaggttgcggtggaggctgat
gtggtggttccggttgtgttggttgaagatgatgatgaagggttaagtgggaatgcgagg
gggaggggtggggatgggagagaatgcaaggggaaatctgagaagggtaaagagttggat
aaagatagtgagagtgattgtgatgtgattgtagtgggagagagggatttatgtaaagat
gatgatgatgattcggatgttgttgaggtgttggcttttgacaagggggaagagagggaa
attgaaagggtagtagatggtggtggtggtgatgatgtggaggaggaggagaggattgat
tctttgtcgagtgaagatgcgagtgaagaatctaatgaagatacaaatgatgaatccgat
gagagttttagagatgagggttttgttggatcagatcatgctgagagttcggatgattca
agttcttatgcaaagtctgaggatgaaggagacaatgattctgatgatggttgtgggaca
gatagaagaattgaagggaagaatggttttaaaaggaaggggagggagaaggggaagttc
gccgagggaagtggaagggaaaatgatagaggggagaaggaaacggttgatggcagattt
gaggacaaggtagaaacatttgagctagaagaatcaagtgaaagcgatgatgaagatggg
aacagctcatgtcattttgatgactccgatgaagaaaatgatagttcaaagtctgaaaca
agtgttggtaggaagaatgggaagcgaattgttaagagtggatttctgaaaagaacacag
aatgttgcagatcgtcttcgatcagatgcacttataacatccagaagtaaaaaagtgagt
ttaaggaaagatggctcgcagattcaacctttggtagagactgatgataaaagtcgtgac
atatatggtggcaacagaaggaaaaatctgaagatgaccactgggagaaacgcagatgag
gatattgaccctgtaaaggctttttgtgcttttttcgctggtaaaagagagggtctaaaa
aagattgaaaaggaagaaataaaacacaagttctggtttcctgaaaagaagccagttgag
aaatcagctttcgatgcagagcttgatcggctctttgaagatctgaacacggcccttact
tgtgaagatattggttcaactcaactggaggttgataatggtgatcactgtaagatgcaa
agtgattgtaatagagacaaacacgatcttgttcttgatgaacaaatcggacttgtatgc
aaatattgttcgcatgtgagccaagagatcagacatattcttccaacctttagcacctct
gatcctcagagtcgtaggaggagacattttgtacaacctgaatgccctttattttcagat
tacttccaaggcatggtttctgaacgacatgattatgatgattacaacactataggaagt
gtctgggatttggtaccaggggtgagaagcagcatgtatgaacaccagcgtgaaggtttt
gagttcatctggaagaatcttgctggcggaattatgatagacgagttggagaagcccctg
tccagttctggttctggatgcattatatcgcatgcccctgggactggaaaaactcgcctt
acaatcgtatttctccaatcattcatgaggatgtacccagattctcggccggtaatcata
gctcctaagagcatgcttcttacttgggaagaggagtttaaaaagtggaacatcaatata
cctttccataacatggacaacctggagttttctggccaggaaaattcggcagctgtaaaa
atttcgaggatgggagggcacaacaggaacaataaaactcttgcacgtttagtcaagctt
tattcatggaaaagggacaaaagcatattgggaataacatatgctttatttgataagctt
gtgagcgctgagacaagtaatgctgagtgcgatccttcagaagagcttatggggaatgtc
ctccttcagcttcctagcattattgtactggatgaaggacacaatccccgcaatgaccaa
agccgtatctacaactctttactcgatgttgagactgagaggcgcatcatactgtcagga
actcccttccagaataattttgttgagctatataataccctgcgcttggtgagccccaaa
tttgacagtaaatcttccaaatttgatgatacattggagaaaaagttgaggaagatcagc
aaagaattaaaatctaattggtcgggccgtaaactgatggagctaaagcatatgattagt
ccttttgtccatgtgcataaaggaaagataattcaagaaagatgtcccagattgaaggac
gccttgatccgcttgcagccgacagatttgcaggaggagctaatagctgccctgaaaacc
aaagatcataaaaatggccactttgaaatagcacatgaaatttcactagtatctgtccat
ccctcgctcttgccaaagcaatgttttcgattgcatcagttctcatcttacaaggataag
ctgcaaagactaaaaaaagatccttattccggtgcaaagacaaaatttgttatagaactt
tgtcggctgagtgtggcactgaaagaaagggtattgatttttggtcagtttattaaacct
ttgaaattaatcaaaaagcagctccagagttactttggctggactgaaggaagggaagtg
ttatatatggatggaaaacttgaagcaaagcagcgacaatcttcaatcagtgctctgaat
gatccaaaaagcaaatcaagggtacttttggcatctataaaggcttgttctgaaggcatc
catctggtgggagcttcgagagttgttctgctagatgtagtgtggaatccctctgtcgag
agacaggcaataagtcgagcctataggattggccaaacaaaaattgtctacacctaccat
cttatagccgaagacatggaagtccgtaagtacaaggtacagactgccaaggatcgattg
tcggagatgctgttttcttcgaaagacacggatagcttgcagaagaattcgccggatatg
gtctctgaagataggatcttgcaagagatgtatcaacagaatgataagctaggtggctta
tttaaacaaattctttaccagccaaaagaatcagatttgatagatacatttgatgtggtt
gcatag
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