Daucus carota (carrot): 108204516
Help
Entry
108204516 CDS
T05350
Name
(RefSeq) uncharacterized protein LOC108204516
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
108204516
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108204516
03041 Spliceosome [BR:
dcr03041
]
108204516
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
108204516
Spliceosome [BR:
dcr03041
]
Complex B
Other components
Prp19-related factors
108204516
Complex C
108204516
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
Suf
TPR_15
Mad3_BUB1_I
UTP6_C
TPR_19
NRDE-2
Motif
Other DBs
NCBI-GeneID:
108204516
NCBI-ProteinID:
XP_017229492
UniProt:
A0A166HYP4
LinkDB
All DBs
Position
1:42294221..42299569
Genome browser
AA seq
908 aa
AA seq
DB search
MSIPKEYYPSQDDLIYEEEILRNPFSLKLWWRYLIARTDSPFEKRRLIYERALKALPGSY
KLWYAYLRERLELVRNFPISHYEYKSLNNTFERALVTMHKMPRIWIMYLLTLTDQKLVTV
TRRCFDRALCALPVTQHDRVWEIYLVFVSQRGVPIETSLRVYRRYLKYDPGHIEEFIEFL
VDSELWQEAAERLAGVLNDDTFYSIKGKTKHKLWLELCDLLTQHANEISGLNVDAIIRGG
IRKFTDEVGRLWTSLADYYIRRKLLMKARDIFEEGMTTVMTVRDFSVIFDAYSQFEESML
ALKMEDMSESEEEDGEGSMVEEEDDDEGDRLNVGDIKLKIKKLWLSDDRDVNLGLARLED
LMDRRPELANSVLLRQNPHNVEQWHRRVKIFEGNPARQLETYTQAVRTIDPMKAVGKPHT
LWVALAKLFETHNGINDARVIFDEAVQVGYKAVDNLASVWCEWAEMELRHKNFKVALEVM
RRATAEPSVEVKRRVAADGNEPVQIKLHKSLRLWTFYVDLEESLGTLESTRAVYERILDL
RIATPQIIINYAMLLEDHKYFEDAFKVYERGVKIFKYPHVKDIWVTYLSKFVKRYGKSKL
ERARELFEHAVEMAPAESVKPLYLQYAKLEEDHGLAKRAMSVYDQATKAVPASEKLSMYQ
IYIARVAEIFGVPKTREIYEQAIESGLPDKDAKTMCIKYAELEKSLGEIDRSRGIYKHAS
EFADPRSDADFWSKWHEFEVQHGNEDTFREMLRIKRSVTAKYSQSHIILPEYMMQKDLKP
NSEEAMDPQKRNGILGDDMAALERQLAPPANDAAAKDSTRLLGFVSAGVESQTEGGLKVA
ANKEDIELPDESDSEDEGNVEITQKDIPETVYGGIRKRSAEDEDGDKVKEEDDKLGALER
IKRMKRGA
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgtcaattcccaaagaatactatccgagccaagatgacctcatctatgaggaagagatt
ctccgcaacccattcagtttgaagctttggtggcgctatctaatcgctcgcactgactcg
ccgttcgagaagcgccgcctgatttacgagcgcgccctcaaagctctccccggaagctac
aagctctggtacgcttatttaagagaacgtctcgaattggttcggaactttcccattagt
cattatgaatataaatcgcttaataatacttttgaaagggctttagttactatgcacaaa
atgccgaggatttggattatgtatttgttgactttgactgatcagaagttagttacagtg
actaggcggtgtttcgatagggcgttgtgtgcgttgcctgttacgcagcacgatagggtt
tgggagatttatttggtgtttgtgagtcagagaggggttccgattgagacgtcgttgagg
gtttataggaggtatttgaagtatgatcccgggcatattgaggagtttattgagtttttg
gtggactcggagttgtggcaagaggcggcggagaggttggcgggggttttgaatgacgat
acgttttattcgattaaagggaagacgaagcataagttgtggttggagctgtgtgatttg
ttgacgcagcatgccaatgagatatcggggttgaatgtggatgcgattattaggggtggg
attaggaagtttacggatgaggttgggaggttgtggacatcgttggcggattattatatt
aggaggaagttgttgatgaaggcgagggatatttttgaagaggggatgacgacggttatg
actgtgagggattttagtgtgatttttgatgcgtattcgcagtttgaagagagtatgctt
gctttgaagatggaagatatgagtgagagtgaagaagaggatggggaaggatcgatggtt
gaagaggaggatgatgatgaaggggatcggttgaatgttggagatattaagttgaagatt
aaaaagctttggctgtcggatgatagagatgtgaatttggggttagctcggttggaagat
cttatggataggaggccagaattagctaacagtgtgctgcttaggcaaaaccctcataat
gtggaacagtggcataggagagttaagatatttgaagggaaccctgctaggcaactggag
acctatacccaagctgtacggactattgatccaatgaaagctgtgggaaagcctcatacg
ttgtgggttgccttagctaaattgtttgagactcacaatggtatcaatgatgctagggtg
atatttgatgaggctgtacaagttggctacaaagctgtggataatttggctagtgtttgg
tgtgaatgggcagagatggaactaagacacaagaattttaaggtagcacttgaggtgatg
aggcgggctacagctgaaccatcagttgaggtcaaacgtagagtggccgctgatggcaat
gaacccgttcagataaagctgcacaagtccctcaggctttggacattctatgttgacctg
gaggagagcttaggtaccttggagtcaactcgtgcagtgtatgagaggatattggaccta
aggatcgccacaccccaaattataatcaattatgctatgctcttggaagaccataagtac
ttcgaggatgcttttaaggtctatgaacgaggcgtgaagatatttaaatacccacatgta
aaggatatatgggtgacttatctttctaaatttgttaaaagatacggaaagtcaaagctt
gaacgagccagagagctatttgagcatgctgttgaaatggctcctgctgaatcagtgaag
cctttgtacttacaatatgctaagttggaagaggatcacggtctagccaagcgagctatg
agtgtttatgatcaagcgacaaaggctgttcctgccagtgaaaaattgagcatgtaccaa
atatacatagctcgcgtagctgaaatatttggggtaccaaaaactagggaaatatatgag
caagcaatagaatctgggcttccggacaaggatgctaaaacaatgtgtataaaatatgct
gaacttgagaagagtttaggagagatagatcgctctcgtggaatatacaagcatgcatct
gagttcgcagatccaagatctgatgcagacttttggagcaagtggcatgaatttgaggtt
caacatggtaatgaagatacttttagggagatgctacgtatcaaaaggagtgttactgca
aagtatagtcagtcgcacattattcttcctgagtatatgatgcaaaaggatctaaagcct
aattcagaggaagcaatggaccctcagaagagaaatggaattcttggtgatgatatggct
gctcttgagaggcagctagcacctcctgcaaatgatgcagctgctaaggatagcacacgg
ctgctgggctttgtgagtgcaggagttgagtcgcagaccgaaggtggtctgaaggttgct
gctaataaagaagacattgagcttccagatgaaagtgacagcgaagacgaaggtaatgtt
gagatcacccagaaagatattccagaaacagtttatggtggtatacggaaaagatcagca
gaagatgaagacggtgacaaggttaaggaggaggatgataaacttggtgctcttgagcgt
ataaaaagaatgaagcgaggtgcgtaa
DBGET
integrated database retrieval system
