Daucus carota (carrot): 108204522
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Entry
108204522 CDS
T05350
Name
(RefSeq) ruBisCO large subunit-binding protein subunit beta, chloroplastic
KO
K04077
chaperonin GroEL [EC:
5.6.1.7
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108204522
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108204522
03110 Chaperones and folding catalysts [BR:
dcr03110
]
108204522
03029 Mitochondrial biogenesis [BR:
dcr03029
]
108204522
09183 Protein families: signaling and cellular processes
04147 Exosome [BR:
dcr04147
]
108204522
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.1 Enzymes altering polypeptide conformation or assembly
5.6.1.7 chaperonin ATPase
108204522
Messenger RNA biogenesis [BR:
dcr03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Chaperones
108204522
Chaperones and folding catalysts [BR:
dcr03110
]
Heat shock proteins
HSP60 / Chaperonin
108204522
Mitochondrial biogenesis [BR:
dcr03029
]
Mitochondrial protein import machinery
Matrix
Other matrix factors
108204522
Exosome [BR:
dcr04147
]
Exosomal proteins
Exosomal proteins of haemopoietic cells (B-cell, T-cell, DC-cell, reticulocyte, and mast cell)
108204522
Exosomal proteins of other body fluids (saliva and urine)
108204522
Exosomal proteins of breast cancer cells
108204522
Exosomal proteins of colorectal cancer cells
108204522
Exosomal proteins of bladder cancer cells
108204522
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Cpn60_TCP1
Motif
Other DBs
NCBI-GeneID:
108204522
NCBI-ProteinID:
XP_017229499
LinkDB
All DBs
Position
1:28835886..28842813
Genome browser
AA seq
607 aa
AA seq
DB search
MASTFAAMSSAGSLIAPSGSVMDKKILSSSTKLSSFASISSRPFGRRQSVSVRKARPLVT
AAAKELYFNKDGSAIKKLQNGVNKLADLVGVTLGPKGRNVVLESKYGSPKIVNDGVTVAK
EVELEDPVENIGAKLVRQAAAKTNDLAGDGTTTSVVLAQGIIAEGVKVVIAGANPVLVTR
GIEKTTKALVTELKLMSKEVEDCELADVAAVSAGNNYEIGNMIAEAMSKVGRKGVVTLEE
GKSAENSLYVVEGMQFDRGYISPYFVTDSEKMTVEYENCKLLLVDKKVTNARDLVNVLED
AIRGSYPILIIAEDIEQEALATLVVNKLRGALKIAALKAPGFGERKSQYLDDIAILTGGT
VIREEVGLSLDKADKDVLGHAAKVVLTKDTTTIVGDGSTQDAVNTRVSQIRNLIEAAEQD
YEKEKLNERIAKLSGGVAVIQVGAQTETELKEKKLRVEDALNATKAAVEEGIVVGGGCTL
LRLAAKVDAIRDSLENNEEKVGADIVKRALSYPLKLIAKNAGVNGSVVSEKVLASDDQKY
GYNAATGNYEDLMAAGIIDPTKVVRCCLEHASSVAKTFLMSDCVVVEIKEPEPAMPVNPM
DNSGYGY
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atggcttccacatttgctgctatgtcttctgctggctccttgattgcgcccagtggctca
gtgatggataagaagattctgagctcatctacaaagttatcatcttttgcctctatatct
tcacggccatttggcaggagacaaagtgtttctgtacgaaaagcacgtcctctagtaact
gcagctgcaaaggaattgtatttcaacaaggatggatctgcgataaagaagctacaaaat
ggagtgaataagctggctgatctagttggtgtaactctcggtccaaagggaaggaatgta
gtcctagagagcaaatatggttccccaaaaattgtaaatgatggagttactgttgcgaaa
gaggttgaattggaggatccggtggaaaacattggtgcaaagttggtgagacaagcggct
gctaagaccaatgatttggctggtgacgggacaacaacatctgttgttcttgcacagggt
attatcgctgaaggtgttaaggtagttatagctggtgcaaaccctgtccttgtcaccaga
ggcattgagaagacaacaaaggctttagtgactgaacttaaattgatgtcaaaagaggtt
gaagactgtgaattggcagatgtggctgcagttagtgctggaaacaactatgaaatagga
aatatgatagcagaagcaatgagtaaagtgggtcgaaaaggagtagtgactttggaagag
ggtaaaagtgcagaaaacagtttatatgttgttgaaggaatgcaatttgatcgtggttac
atctcaccatactttgtaactgatagtgaaaagatgactgttgaatatgagaactgcaag
ctattactagttgacaagaaagtgacaaatgcaagggatcttgttaatgtactggaagat
gccattcgaggtagctaccctattctaataattgcagaagacattgagcaagaagctcta
gcaactcttgtcgttaacaagcttagaggggccttgaagattgctgcacttaaagctccc
gggtttggggaacgaaagagccagtatcttgatgacattgccattcttacaggagggact
gtgattagagaagaggttgggcttagcttagacaaagctgacaaagatgtattgggtcat
gccgccaaggttgttctgacaaaggatacaactacaatcgttggggatggcagcacacaa
gatgcagttaacacacgtgtatcacaaatcagaaacctcatcgaggctgccgagcaagat
tatgaaaaagaaaaacttaatgaaagaattgcaaagctctcgggaggtgttgctgtcatt
caggttggagcacaaactgaaacagagttaaaggagaaaaagcttagagtagaagacgct
cttaatgcaacaaaggcagctgttgaggaaggtattgttgttggtggcggctgtactctt
ttaaggctagctgccaaagttgatgccattagggacagtcttgagaataacgaggaaaag
gttggggcagatatagtaaaaagagctttgagctatcctctcaagttgattgccaaaaat
gccggtgttaatggaagtgtcgtcagtgaaaaggtgcttgcctcagatgaccagaagtat
ggatataatgcagctacgggaaactatgaagatttgatggctgctgggatcattgaccca
accaaggttgtgagatgttgcttggaacatgcttcatctgtggcgaaaacctttttgatg
tcggattgtgtagttgtcgagatcaaagagcctgagcctgccatgcctgtcaaccccatg
gacaattcaggttatggatactag
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