Daucus carota (carrot): 108204539
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Entry
108204539 CDS
T05350
Name
(RefSeq) protein TRANSPORT INHIBITOR RESPONSE 1
KO
K14485
transport inhibitor response 1
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04075
Plant hormone signal transduction
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09130 Environmental Information Processing
09132 Signal transduction
04075 Plant hormone signal transduction
108204539
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dcr04121
]
108204539
Ubiquitin system [BR:
dcr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
108204539
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Gene cluster
GFIT
Motif
Pfam:
Transp_inhibit
F-box_5
LRR_At5g56370
LRR_6
LRR_4
F-box-like
LRR_8
F-box
LRR_At1g61320_AtMIF1
DUF3630
Motif
Other DBs
NCBI-GeneID:
108204539
NCBI-ProteinID:
XP_017229520
UniProt:
A0AAF1AM89
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Position
1:50186773..50192826
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AA seq
585 aa
AA seq
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MDPVRKRTKDLSKSVDSAHLAPFPDEVLEKVLSLVKSHKDRSSVSLVCKDWYNADRWSRS
KIFIGNCYSVSPEIVARRFPNIRSVTLKGKPRFSDFNLVPQNWGADIHSWLVVFAQVYPF
LEELRLKRMVVSDESLEFLANSFPGFKVLSLLSCDGFSTDGLKAIATHCKNLTELDIQEN
GIDDLGGGWLSCFPETFVSLEVLNFASLNSDVTFDALERLVSRCKALRVLKVNKHISLEQ
IQKLLLRAPQLMEVGTGSFQQELVPRQFAELETAFGSCKNLHTLSGLWEASSVYLPVIYP
ACANLTYLNLSYATLQSDELSKLLPNCSNLRRLWVLDTVEDKGLEAVGSSCPLLEELRVF
PADPFDQDMVHGVTESGFVAVSSGCRKLHYVLYFCRQMTNAAVATIVKNCPDFTHFRLCI
MNPGQADYLTNDPMDEAFGAVVKTCTKLQRLAVSGLLTDKTFEYIGKYAKNLETLSVAFA
GSSDRGMQSVMEGCPKLRKLEIRDCPFGNEALLSGLDKYESMRSLWMSACNLTMNGCRQL
AKNMPRLNVEVIKDEESDDSEADKVYVYRSVVGPRRDAPPFVLTL
NT seq
1758 nt
NT seq
+upstream
nt +downstream
nt
atggatccagtgagaaaaaggaccaaagacttgtcgaaatcggtggattcagctcacctt
gctccatttcctgatgaggttcttgagaaagttctttctctagtgaaatctcacaaggat
aggagttcagtttcattagtatgcaaagattggtacaatgctgataggtggagtaggagt
aagatctttattggaaattgctactcggtctcaccggagatcgtggccaggagatttcca
aatataaggagtgttactttgaaggggaagccgcggttttcagatttcaatttggtgcct
cagaattggggtgctgatattcattcatggctcgttgtgtttgctcaagtttaccctttt
ctggaggagttgaggttgaaaaggatggttgttagtgatgaaagtctggaatttttagca
aattcatttccagggttcaaagtcttgtctctcttgagctgtgatggttttagtacagat
ggtcttaaagctattgctactcattgcaagaacttgactgagctcgacatacaagaaaat
ggcatagatgatctcggtgggggttggttaagttgctttcctgagacctttgtgtctcta
gaagtgctgaattttgccagcttgaacagtgatgtcacatttgatgctcttgaaaggtta
gttagcaggtgcaaagcattaagggttttaaaggttaataaacatatttccttggaacaa
atacaaaagttactgctaagggcaccccagctgatggaggttggtactggttcatttcaa
caagagcttgttccccgtcagtttgcagaacttgaaactgcattcggtagctgcaaaaat
ttacatacactctcaggtttgtgggaagcttcttcggtctatttaccagtcatataccct
gcctgtgccaatcttacatatctgaatttgagctatgcaactctgcaaagtgatgaactt
tccaagcttctacctaattgctcgaatctacggcgtctttgggttctcgacacagtggaa
gataaggggctagaagctgttgggtctagctgtcccttactcgaggaattgcgagttttt
cctgcagatccatttgatcaggatatggtccatggggtgaccgagtcggggtttgtggct
gtatcttctggatgtcgcaaacttcactatgtcctatatttctgcaggcagatgactaat
gctgcagttgcaactatagtcaagaattgtcctgattttactcatttccgtctttgcata
atgaatccaggccaggcagattacctgaccaatgatccgatggatgaggcatttggtgcg
gtggtcaagacctgtactaaactccagaggcttgccgtttcaggcctactaactgacaaa
acctttgagtatattgggaagtatgctaaaaacctagaaaccctttccgtggcgtttgct
gggagcagtgacaggggaatgcaatctgtgatggagggttgcccaaagctaaggaagcta
gagattagagattgcccattcggaaatgaagctttgctttccgggttagataagtacgaa
tcaatgcggtctctctggatgtcagcgtgtaacttgacaatgaatggttgcagacaactt
gcaaagaacatgccgaggttgaatgttgaagttattaaggatgaagaaagtgatgacagc
gaagctgataaagtttatgtctatcgatcagtggtagggcctcgaagagatgcacctcct
tttgttctcaccctctga
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