Daucus carota (carrot): 108204662
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Entry
108204662 CDS
T05350
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
108204662
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108204662
03041 Spliceosome [BR:
dcr03041
]
108204662
03009 Ribosome biogenesis [BR:
dcr03009
]
108204662
03016 Transfer RNA biogenesis [BR:
dcr03016
]
108204662
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
108204662
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
108204662
Spliceosome [BR:
dcr03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
108204662
Complex C
U4/U6.U5 tri-SnRNP related factors
108204662
Ribosome biogenesis [BR:
dcr03009
]
Eukaryotic type
Pre-60S particles
Helicases
108204662
Transfer RNA biogenesis [BR:
dcr03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
108204662
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Zot
Motif
Other DBs
NCBI-GeneID:
108204662
NCBI-ProteinID:
XP_017229700
UniProt:
A0A162ALL9
LinkDB
All DBs
Position
1:complement(43165924..43173190)
Genome browser
AA seq
992 aa
AA seq
DB search
MGSIKRKSLEDPTEESAPHPKQQRENGFAGVDEPVACLHDVSYPEGFVHRSSDKAVAQEE
SKPAKEFPFTLDPFQSEAIKCLNIGESVMVSAHTSAGKTVVALYAIAMSLKNKQRVIYTS
PIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEVWRSMQYNASDLVKEVAWI
IFDEVHYMRDRERGVVWEESIVLAPKKSRFVFLSATVPNAKEFADWVAKVHQQPCHIVYT
DYRPTPLQHYIFPSGGDGLYLVVDEKGKFREDSFQKGLNALVPSSEGAKKNEAGKWQKGV
VAGRAGEESDIFKMVKMIIQRQYDPVIVFSFSKRECELLAMQMAKLDMNGDDEKVNIETI
FWSAMDMLSDDDKKLPQVSNMLPILKRGIGVHHSGLLPILKEVIEILFQEGLIKCLFATE
TFSIGLNMPAKTVVFSNVRKFDGEKFRWITGGEYIQMSGRAGRRGIDERGICILMVDEKL
EPSTAKMMLKGSADCLNSAFHLSYNMLLNQIRHKDSEPENLLRNSFYQFQADRAIPDLEK
QAKHLKEEKDSMIIEEEDSLDNYYSLLQQYKSLKKDVRDIICSPRYCLPFLQPGRLVCIN
CSGDENSPAFSTDDLTTWGVVINFERVKGLSEDDANKKPEDADYTVDILTRCAVTRDEVS
KKTMKIIPLKESGEPVVVSLPLSQIYSLSSVRLVIAKDLIPLQNRENTLKKVSEVLSRFS
KEGMPLLDPEEDMKVQSSSYRKSVRRIEALENLFDKHEIAKSPLIEQKLKVLHKKKELTA
RIKQLKRAVRNSSVLAFKDELKARKRVLRRLGYVTDDDVVNVKGQVACNISSADELTLTE
LMFNGVLKDLKVEEMISLLSCFVWQEKLKDAPKPRDELQLLFTQLQDTAQRVAKVQFECK
VQIDVENFANSFRPDIMEAVYAWAKGSKFYEIMEISQVFEGSLIRAIRRLEEVLQQLILA
AKSVGETEFEQKLEDAVSKIKRDIVFAASLYL
NT seq
2979 nt
NT seq
+upstream
nt +downstream
nt
atggggtcgataaagaggaaatctttagaagacccgacagaggaatctgcacctcaccca
aaacaacagagggaaaatggttttgcgggtgttgatgagcctgtggcgtgcttgcacgat
gtgtcgtatcctgagggttttgttcatcgtagttctgataaggctgtagctcaagaagag
tcgaagcctgcaaaggagtttccctttacacttgatccgtttcagtcggaggctatcaag
tgccttaacattggggaatctgtcatggtatctgctcacacatcagcagggaaaactgta
gtagcgttatatgcaattgctatgtcattaaagaacaagcagcgtgtgatatatacttct
ccaatcaaagcacttagcaatcagaagtacagagaatttaaagaagaattttcagatgtt
ggcttgatgacgggagatgttacaattgagcccaatgcttcttgtttggttatgacaaca
gaagtttggcgtagtatgcagtacaatgcatcagatcttgtaaaagaggtagcatggatt
atatttgatgaggtacattacatgcgtgatcgagaaagaggcgttgtatgggaagagagc
attgttttggcaccaaaaaagtctcgattcgttttcctatcagctacagttcccaatgca
aaggagtttgctgattgggttgcaaaggtacaccagcaaccatgccatattgtttacact
gattatcgcccaacgcctcttcaacattatattttcccttccggtggtgatggtctgtac
ttggtagtggatgagaagggaaaatttcgtgaggatagctttcagaagggtttgaacgct
cttgttccgtctagtgaaggtgctaagaaaaatgaggctggaaaatggcagaagggtgtg
gtggccggtagagcaggtgaagaaagtgacatattcaagatggtcaagatgattattcag
cgtcagtatgatcctgtgatagtttttagtttcagcaaaagggaatgtgaattgcttgcc
atgcagatggcaaaattggatatgaatggtgatgatgagaaggtgaacattgaaactata
ttctggagtgctatggacatgttatcagatgatgacaaaaaactacctcaggtatcaaat
atgctacccatcttaaagcgtggaataggtgtgcatcattctggtttgcttcccatcctc
aaagaagtgattgagatactgtttcaggaaggactcatcaagtgtttgtttgccacagag
acattcagcatagggttgaacatgcctgcaaaaactgtggtcttctcaaatgtccgcaaa
tttgatggtgaaaaatttaggtggattactggtggagagtatatacagatgagtggccga
gctggtcgtagaggaattgatgagcgagggatttgtattctgatggttgatgagaagctg
gagccttccactgccaaaatgatgcttaaaggaagtgctgattgtttaaacagtgccttc
catttaagttacaacatgctgttgaatcaaataagacacaaagatagtgagcctgaaaat
ctacttcgtaactcattttatcaatttcaagctgaccgcgctataccagatctcgagaaa
caagcaaagcaccttaaggaggagaaggattcaatgataattgaagaggaggatagctta
gacaattattactctctgcttcagcaatataaaagcttgaagaaagatgttcgtgatatt
atctgctctcctaggtactgtttacctttcttgcagcctggcaggcttgtttgcataaat
tgctccggtgatgagaattcaccagctttctcaactgatgacctgactacatggggagta
gtaatcaattttgaaagggtgaaaggactctctgaagatgatgcaaataaaaaaccagaa
gatgcggactataccgtagacattcttacaagatgtgcggtaaccagagatgaagtttca
aagaagacaatgaagattattccattaaaagagtctggagaacctgttgtagtttcactt
cctctatctcaaatctatagcttgagcagtgttcgacttgtaatcgcaaaggatcttata
ccattgcaaaatcgagaaaacacattaaagaaggtttccgaggtcttatctaggttttcc
aaagaaggaatgcctctattggatccggaagaagacatgaaggtccaaagtagctcgtac
agaaaatcagttcgaagaatagaagctttggaaaacttgttcgataagcatgaaattgca
aagtctccgcttattgagcagaaacttaaagtattacacaaaaagaaagagctgactgcg
agaattaaacagttaaagcgagctgtgcgtaactcctcagtattggcttttaaagatgaa
cttaaagcaagaaaaagggtccttcgtagacttggatatgtcacagatgatgatgttgtg
aacgtgaaaggacaggttgcttgtaatatcagtagtgctgatgaattgactttgacagag
cttatgtttaatggggttctaaaggacctaaaggtagaagagatgatttcccttctctct
tgttttgtgtggcaagagaagcttaaggatgctccgaagcccagggatgaacttcagtta
ctctttactcagttacaagatacagctcaaagggttgccaaagttcaatttgagtgcaag
gtacaaattgatgtggaaaattttgcaaattcatttcgacctgatatcatggaagcagtg
tatgcttgggcaaaaggttcaaaattctatgagattatggaaatctcacaggtttttgaa
ggcagtctaatcagggctattagaagattggaggaagtccttcagcagttgatattggct
gcaaagtctgtaggggagaccgagttcgaacaaaaattagaggatgctgtttctaaaatt
aagagggatatagtttttgcagcatctctgtacttgtag
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