Daucus carota (carrot): 108204796
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Entry
108204796 CDS
T05350
Name
(RefSeq) F-box protein SKP2A isoform X1
KO
K03875
F-box and leucine-rich repeat protein 1 (S-phase kinase-associated protein 2)
Organism
dcr
Daucus carota (carrot)
Pathway
dcr04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
108204796
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
dcr04121
]
108204796
Ubiquitin system [BR:
dcr04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
SCF complex
Target recognizing subunit (F-box)
108204796
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DUF7885
LRR_6
LRR_4
LRR_At5g56370
F-box
F-box-like
LRR_8
LRR_At1g61320_AtMIF1
Motif
Other DBs
NCBI-GeneID:
108204796
NCBI-ProteinID:
XP_017229901
UniProt:
A0AAF0W250
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All DBs
Position
1:complement(16577923..16581743)
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AA seq
431 aa
AA seq
DB search
MIIKKDILLKKCILDVEPTLRSQSRSCQVASLRLLILFLTRTHLLSERERERAVYNNTHK
KEQLTQHNLKKDHRIKKCILLSDKMVAGGGMKISGGGAINEWKDIPMELLLRIVSLVDDR
TVIVTSGVCSGWRDAVCWGLTRLSLSWSKKNMNNLVLSLAPKFSKLQVLVLRQDNSQLQD
NAVQAIANFCPDLQDLDLSKSFKLTDCSLYALAHGCPNLTKLNISGCSAFSDTALSYLSD
YCRKVQTLNLCGCVKAASDSALKAIGYNCTRLQYLNLGWCENVGDIGVMSLAYGCPDLKV
LDLCGCVLITDASVVALANNCLRLQSLGLYYCQNITDRAIYALAHTRVKNKQSVWESVRN
RYEEEGLKSLNISQCTALTPPAVQALCDSCPALHTCPGRHSLIISGCLNLTSVHCACAFQ
AHRATGNVQAH
NT seq
1296 nt
NT seq
+upstream
nt +downstream
nt
atgataataaaaaaagatatcctcttaaaaaaatgtatacttgatgtagagcccacttta
aggtcccagtcacgctcgtgccaggtggcttccttgcgtctcctaattctctttcttacc
cgtacgcatctcctgagcgagagagagagagagagagctgtttataataatacacacaag
aaagagcagctcacacaacataacttgaagaaagatcatagaatcaagaagtgcattttg
ttatcagataaaatggttgctggtggggggatgaagataagtggtggtggagcgatcaat
gaatggaaagacattccaatggagcttctgctgcggattgtgtcgctcgttgatgatcga
acagtgattgttacttcgggtgtttgtagtggctggagagatgctgtttgctggggatta
actcggttgtccctttcttggtccaagaagaacatgaataacttggtgctatctctggct
cctaaattctcaaaactgcaagttttagttctccgtcaggataactcacagctgcaggat
aatgctgttcaggctattgcaaacttttgtcctgacctgcaggatctagacctaagcaag
agtttcaaactcactgattgctccctatatgccttggctcatggttgccctaatctgaca
aagctcaacatcagtgggtgctcggcattcagtgatactgctctctcatatttaagcgat
tattgcagaaaagttcaaacattaaatctctgtggatgcgtcaaagctgcatctgactct
gccttgaaggctattggatataattgtactcggttgcagtatcttaacctggggtggtgt
gagaatgttggagatataggtgttatgagtctagcttatgggtgccctgatctaaaagta
cttgatttgtgcggttgtgttcttataacagatgcgagtgtagttgctttggcaaacaat
tgccttcgtttgcagtctctcggtctctactactgccaaaatatcacagatagagcaatc
tatgcccttgctcacactcgagtgaagaacaaacagagtgtgtgggaatctgtgaggaat
aggtacgaggaagaagggcttaaaagtttgaacatcagtcagtgcacagctcttactcct
ccagctgtgcaagccttgtgtgactcatgtcctgcacttcatacatgcccaggaagacat
tcgctgatcataagtgggtgtctcaacttaacgtctgtccactgtgcctgtgcatttcaa
gctcatcgcgcgaccggtaatgttcaggctcactga
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