Daucus carota (carrot): 108204833
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Entry
108204833 CDS
T05350
Name
(RefSeq) 30-kDa cleavage and polyadenylation specificity factor 30
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
dcr
Daucus carota (carrot)
Pathway
dcr03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
108204833
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
dcr03021
]
108204833
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108204833
Transcription machinery [BR:
dcr03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
108204833
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
108204833
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH_2
Torus
zf-CCCH
zf-CCCH_3
Motif
Other DBs
NCBI-GeneID:
108204833
NCBI-ProteinID:
XP_017229957
UniProt:
A0A166IJS3
LinkDB
All DBs
Position
1:complement(47740271..47748710)
Genome browser
AA seq
689 aa
AA seq
DB search
MDDGEGGLSFDFEGGLDSGPTQPTASVPIIHQPPSLPAASAANTPYSAPPADVSDQSAPS
NFSGRRSYRQTVCRHWLRSLCMKGEACGFLHQYDKARMPICRFFRLYGECREQDCVYKHT
NEDIKECNMYKLGFCPNGPDCRYRHAKLPGPPPPMEEVLQKIQQLTSHNYSNSNRFYQNR
NPNYTQNAERPQVPASANGVNQVMKPTPTESPNVQQQQQAQQPVIQAQVQNLSNGQQNQA
NGSAIPLPQGISRYFVVKSCNRENFELSVQQGVWATQRSNEAKLNEAFDSVENVILIFSV
NRTRHFQGCAKMTSKIGGSVVGGNWKYAHGTAHYGRNFSVKWLKLCELSFHKTRHLRNPY
NENLPVKISRDCQELEPSIGEQLASLLYLEPDSELMEISLAAESKREEEKAKGVNPEDGT
ENQDIVPFEDNEEEEEEESDEEDQSFSQGFPMMGQGRGRGRGMMWAPNMPLARGGRPMPG
MRGFPPIMTGPDGFPYGPDGFPVPDMFNMGPRGFGPFGPRFPGDFAGPGGMMFQGRPSHP
GNFLNGGFGMMMGPGRAPFMGGGPGGRALRPGLGDLHPMYPQSQPQSSQASNRGKRDQKA
TSNYRSDRYSAGSDQGKGVDVAGLGGQDISKHQRRMNPEQEDQIGDGNSFKNNESDSEDE
APRRSRHGEGRKKRRSSERDATAGSEDQE
NT seq
2070 nt
NT seq
+upstream
nt +downstream
nt
atggatgacggcgaaggtggcctgagcttcgatttcgaaggcggcctcgactccgggccc
acacaacccaccgcctccgttccaatcatccaccaacctccctctctcccggccgcctcc
gcggcgaacacaccctattctgctccgccggcggatgtttccgatcagtccgcaccgtcg
aacttctccggacggcggagctaccggcagacagtgtgtcggcactggcttcgcagtttg
tgtatgaaaggggaagcctgtgggtttttgcaccagtatgataaggctcggatgccgatt
tgtcggttttttcgactttatggagagtgtcgagagcaggattgtgtttataagcatacc
aatgaggatatcaaggagtgtaatatgtataagttgggattctgtccaaatggtcctgat
tgtcggtataggcatgcaaagctgccaggacctccacctccaatggaagaagtacttcaa
aaaattcagcaactgacatcacacaattacagtaactcgaacagattttatcaaaatcgt
aaccccaattatactcaaaatgcagaaagacctcaggttccagcaagtgctaatggtgtc
aatcaagtaatgaaacccacaccaacagagtcacccaatgtgcagcagcagcaacaggcc
cagcaaccagttatccaggcccaagttcagaatctttctaatggccagcaaaatcaagct
aatggatctgctattcctctgcctcaaggaatatctaggtattttgttgtcaaaagttgc
aatagagagaattttgagttgtctgtgcaacaaggagtttgggcaacacaaaggagcaat
gaagctaaacttaatgaagcttttgattcagtggaaaatgttattttaatattttcagta
aacaggactcggcattttcagggctgtgcaaagatgacatctaaaattggtgggtctgtt
gtcggcggaaattggaagtatgctcatggaacggcccattatggaaggaatttttcagtc
aaatggttgaagctttgcgaactatccttccacaaaacacgccatttgaggaatccttac
aatgagaacttgccagtcaagatcagcagagactgccaagagctggagccctcgattggc
gagcagttggcttccctgctttatcttgagccagacagtgagctgatggaaatttcacta
gcagcagaatcaaaaagggaggaggagaaggccaagggagttaatcccgaggacgggact
gaaaatcaagatattgttccatttgaggacaatgaagaggaggaagaagaagaaagcgat
gaagaggatcagagctttagccagggatttccaatgatgggtcaaggcagaggtagggga
aggggcatgatgtgggctcctaacatgcctctagcacgaggtggcagaccaatgcctgga
atgcgtggttttccgcccatcatgacggggcctgatggatttccttatggacctgatggt
tttcctgtgccagatatgtttaatatgggaccccgtggttttggtccatttggccctaga
ttccctggtgattttgctggccctgggggcatgatgttccaaggccgtccttcccatccc
ggaaactttctgaacggtggatttggaatgatgatgggtccgggaagggctcctttcatg
ggaggtggacctggaggaagagctcttcgtcctggacttggagacctgcatcccatgtat
cctcagtctcaaccgcaatcctctcaggcctcaaacaggggtaagagggatcaaaaggcc
acatcaaattataggagcgatagatatagtgcaggctcagatcaaggcaagggtgtggat
gtagcaggcttgggtgggcaggatatttcaaagcatcagcgaagaatgaatcctgaacaa
gaagatcaaataggtgacgggaatagcttcaagaataatgaaagtgatagtgaggatgag
gcaccaaggaggtcaagacatggggaaggaagaaagaagaggcgaagctctgagcgagac
gctaccgcaggttctgaggaccaggaatag
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integrated database retrieval system
