Daucus carota (carrot): 108204846
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Entry
108204846 CDS
T05350
Name
(RefSeq) DEAD-box ATP-dependent RNA helicase 11
KO
K11594
ATP-dependent RNA helicase DDX3X [EC:
5.6.2.7
]
Organism
dcr
Daucus carota (carrot)
Brite
KEGG Orthology (KO) [BR:
dcr00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
dcr03019
]
108204846
03041 Spliceosome [BR:
dcr03041
]
108204846
03036 Chromosome and associated proteins [BR:
dcr03036
]
108204846
Enzymes [BR:
dcr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
108204846
Messenger RNA biogenesis [BR:
dcr03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
108204846
mRNA cycle factors
Common to processing body (P body) and stress granule
108204846
Spliceosome [BR:
dcr03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
108204846
Chromosome and associated proteins [BR:
dcr03036
]
Eukaryotic type
Gene silencing
RISC (RNA-induced silencing complex)
108204846
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
108204846
NCBI-ProteinID:
XP_017229977
UniProt:
A0A166GTM4
LinkDB
All DBs
Position
1:29400926..29411048
Genome browser
AA seq
609 aa
AA seq
DB search
MPTSWADSVAAADNAAAAAGASSGGGRSAYVPPHLRNRPPPSSEPPVLAHGGPSSGNIAP
AGNRWAAPRNDYGRSGYSSGGGGGGGRGGGWNNRSGGWDRGSGRDREVNPFGDDEGADVE
PVEQENTGINFDAYEDIPVETSGDNVPPPVNTFAEIDLGDALNKNIRRCKYVKPTPVQRY
AIPISLANRDLMACAQTGSGKTAAFCFPIISGIMTGQFPPRAPHMSRTACPLALILSPTR
ELSIQIHNEARKFAYQTGVKVVVAYGGAPINQQLRELERGVDILVATPGRLVDLLERARV
SLQMIKYLALDEADRMLDMGFEPQIRNIVQQMDMPPPGVRQTMLFSATFPKEIQRLASDF
LAGYIFLAVGRVGSSTDLIVQRVEYVQETDKRSHLMDLLHAQRANGTHGKQALTLVFVET
KKGADSLEYWLCSNGFPATTIHGDRSQQEREQALRSFKSGHTPILVATDVAARGLDIPHV
AHVVNFDLPNDIDDYVHRIGRTGRAGKSGLATAFFNENNSSMARSLSELMQEANQEVPAW
LARFATRASFGGKNRRGGGRFGGRDFRRDNSYSRGGSDYYGAGNMSSGYGAPSGGYGGAY
GSGVTSAWD
NT seq
1830 nt
NT seq
+upstream
nt +downstream
nt
atgccaacttcatgggctgattctgttgctgctgctgataacgcggcggcggctgctggt
gcgtcttctggtggtggtcggtctgcttatgttccgccccatcttcgtaacaggccgcca
ccttcgtctgaaccacctgttttggctcacggtggtccaagttctggtaatatcgcgcca
gctgggaatcgttgggctgcgcccaggaatgattatgggaggtctgggtatagttctggt
ggtggtggtggtggtggtcgtgggggtggctggaataataggagtggtggctgggaccgt
gggagtgggagggatcgagaagttaacccatttggtgatgatgaaggtgctgacgttgaa
cctgtagagcaggagaataccgggattaattttgatgcttatgaagatattcctgtggag
acgagcggggataatgtgccgcctccggttaatacatttgcagaaattgacttgggtgat
gccctcaacaaaaatattcggagatgcaagtatgtcaagcctacccctgtgcaacggtat
gccataccgatctctcttgcaaaccgggatttaatggcttgtgctcagactgggtctggg
aagacggctgctttctgctttccaattatcagtggaattatgacaggtcagtttccaccg
agagcgccacatatgtcacggacagcgtgtccactggctttaattttgtccccgacaaga
gagttatcaatccaaattcacaatgaagcacggaagtttgcatatcaaaccggtgttaaa
gtagttgttgcttatggaggtgctcctattaatcaacagcttcgagaacttgaaagaggt
gttgacattcttgtcgcaactcctggaaggttggtggatctgcttgagagggcaagagta
tcattacagatgatcaaatatttagctcttgatgaagcagatcggatgctggacatgggt
ttcgagcctcagattaggaatattgtgcagcaaatggatatgccgcctccgggtgtaagg
caaacaatgctattcagtgccacttttcccaaagagatacagagactggcatcagatttt
ttagcaggttatatctttttggctgttggaagggtcggttcaagtaccgatttaatagtc
cagagagttgaatatgttcaagagacggacaaaagaagccatctgatggatctgcttcat
gcacaaagggcaaatggtactcatgggaagcaagctctgactttggtttttgtggaaaca
aagaaaggtgctgactcattggaatattggttgtgcagtaatggtttccctgctactact
attcatggtgatagatcacagcaggaaagagaacaagcattgagatcatttaaaagtggt
cataccccaattttagttgccactgatgtggcagcacgtggtcttgatattccacatgtt
gcacacgtggtcaattttgaccttccgaatgacattgatgattatgtccaccgtataggg
cgaactggacgagctggaaaatcaggactcgccacagcatttttcaacgagaataactct
tcaatggcaaggtcactatctgaactaatgcaagaggcaaatcaggaggttcctgcatgg
ctagctcgctttgcaacccgagcctcgtttggagggaaaaaccggcgtggaggaggtcga
tttggtggtcgtgattttcgaagggacaactcttacagcaggggaggttcagattattat
ggtgctggcaacatgagcagtgggtatggtgctcctagtggtggatacggtggagcatat
ggttctggggtgaccagcgcctgggactga
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